Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1615 ATGGAATTGGAAGTGAGGAGTGACATGGAAAAGATTGATGATGTGATGGTGATGCCTGGTTTTCGTTTTCATCCAACAGATGAGGAGCTTGTTGGTTATTACCTCAAGAGAAAAGTTCAGCAGAAGTCTCTTCCTGTTGACCTGATTAAACAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAACTGGCTAGTACTGGGGAGAAAGAATGGTATTTCTACTGCCCAAGGGACAGAAAATACAGAAACAGTGCAAGGCCAAATAGAGTGACAAGAGCAGGGTTTTGGAAGGCCACTGGAACTGACAGGCCTATATACTCATCAGAAGGAAAATGCATTGGTTTGAAGAAGTCACTGGTGTTCTACAGAGGAAGAGCTGCCAAAGGGATGAAAACTGACTGGATGATGCATGAATTTAGGCTACCTTGTATGCCATCAGACTCTGCAGCTCCTCCCAAGAAACTCTCAGATAAAAGCTTCTCTGCAACTGATTCTTGGGCAATCTGCAGAATATTCAAGAAAACCAACTCCCTATCCATGGTACAGAAAGCTTTATCTCACCCTTGGATCTCTGAGTTACCAGGAGGCATGGTATCTGATTTACTCACACAGCAGGGTGCAAACTTCAACCAGTTCTGTTCTGAGAATATCACAACACCATCAGCCATTCAATTTTGTGGTAATACCAAGCAGGAGCAACTACACCAAATCTCCAATGCTAATATCACTAACTTCTCAGTCTCAGCCTCAGCCTCAGCCTCAGATATTCCTGCTTATAAACCTATCATCAATAGCAACACAGTTACCAAATCCCAACAAATTCCTGTTTCAGATGGAGACCTTGCTGATAACCTCATGTTCTACACACTTGAACCAACAGGCCCCACCAACCCTGACTATATAGGATTTGAAGAGCCAAGCCAGAATTATGGTGGCTTCTCAATTAGCCTCCCTCAGGACATGCAACCAAACATAACTCAAGTGCAGCTTAATCAGTGGGAAAGTACTGTTGAGAGAACAATTGGGTTTCCCTTCAATTTGCCTTCAAATGAGGCTTGGAAGTCTGCTTTGGCATCTTGGGACTCACCCCCTTGCTCCACTGAGATGTCCACCTCTTTTTAA 1128 0.4344 MELEVRSDMEKIDDVMVMPGFRFHPTDEELVGYYLKRKVQQKSLPVDLIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCMPSDSAAPPKKLSDKSFSATDSWAICRIFKKTNSLSMVQKALSHPWISELPGGMVSDLLTQQGANFNQFCSENITTPSAIQFCGNTKQEQLHQISNANITNFSVSASASASDIPAYKPIINSNTVTKSQQIPVSDGDLADNLMFYTLEPTGPTNPDYIGFEEPSQNYGGFSISLPQDMQPNITQVQLNQWESTVERTIGFPFNLPSNEAWKSALASWDSPPCSTEMSTSF* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1615 375 ProSiteProfiles NAC domain profile. 17 176 IPR003441 GO:0003677|GO:0006355
Lja2g1615 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 375 - -
Lja2g1615 375 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Lja2g1615 375 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 5 375 - -
Lja2g1615 375 Gene3D NAC domain 26 181 IPR036093 GO:0003677|GO:0006355
Lja2g1615 375 SUPERFAMILY NAC domain 14 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1615 Lja-Chr2 15929264 15932227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1615 10 227 NAC Transcription Factor Family AT1G26870 66.516 1.12e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g1615 NAM 3.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1615 - - mtr:MTR_6g011860 524.628