Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1614 ATGGGAAGGCCACCTTGTTGTGATAAAGAAGGTGTGAAGAAAGGACCATGGACCCCTGAAGAGGACATCACTTTGGTCTCTTATATACAAGAACATGGTCCTGGCAACTGGAAGGCTGTTCCTGCCAATACTGGGTTGTCAAGGTGCAGTAAGAGCTGCAGACTTAGATGGACCAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCAATAGCCGCATACCTACCACAGAGAACAGACAATGACATCAAAAACTATTGGAACACTTATTTGAAGAAGAGACTCAATAAATTGCAAACAGGTGCTGCTGATGGAACCTTGGGACATGCAGGGTTTTCACCAATTTCTAGGCCAATGCCAAGAGGTCAATGGGAAAGAAGACTCCAAACAGATATTCACATGGCCAAGAAAGCTCTCAGTGAAGCTCTCTCACCAAACAACAACACATTCACCTTGTTACCTGAATCAAACTCAACCCTTTCGAGTGAAAGCTCATTCTGTTCCACTAAACAAACTCAATCTTCACCATGCTATGCTTCAAGTGCTGACAACATAGCACGTTTGCTGAAGGGTTGGATGAAAAAATCACCAAAGGGATCATGTTCCAAGACCCTGAATGACACTGATTCTACTAGTGAAGGATACTCAATTGTTGCAAAGGGAAGCAACAACTGTGTTGAATTGAATGAGACTTTTGAGTCCTTGTTTGGTTATAATGAGTCTTTGGATTCTTTAAATTCTGAGTCCCCTGAAGCTACCCTTTTCCAAGATGAGAGCAAGCCTGCAGGGGTTGGTGCTGAAATGCCATTCTCTTTGCTTGAGCAATGGCTTCTGGATGATGCTGGTTATCAAGAGAAATTGAGCTTGCTGCAGTGA 939 0.4345 MGRPPCCDKEGVKKGPWTPEEDITLVSYIQEHGPGNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKRLNKLQTGAADGTLGHAGFSPISRPMPRGQWERRLQTDIHMAKKALSEALSPNNNTFTLLPESNSTLSSESSFCSTKQTQSSPCYASSADNIARLLKGWMKKSPKGSCSKTLNDTDSTSEGYSIVAKGSNNCVELNETFESLFGYNESLDSLNSESPEATLFQDESKPAGVGAEMPFSLLEQWLLDDAGYQEKLSLLQ* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1614 312 CDD SANT 69 112 IPR001005 -
Lja2g1614 312 Gene3D - 13 66 - -
Lja2g1614 312 CDD SANT 16 61 IPR001005 -
Lja2g1614 312 Gene3D - 69 125 - -
Lja2g1614 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lja2g1614 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lja2g1614 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 309 - -
Lja2g1614 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja2g1614 312 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja2g1614 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja2g1614 312 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 309 - -
Lja2g1614 312 SMART sant 13 63 IPR001005 -
Lja2g1614 312 SMART sant 66 114 IPR001005 -
Lja2g1614 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja2g1614 312 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1614 Lja-Chr2 15912581 15914286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1614 1 305 MYB Transcription Factor Family AT5G62470 50.289 9.32e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g1614 Myb_DNA-binding 4.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1614 K09422 - gmx:778078 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1614 2 15912581 15914286 Lja1g2869 1 34544485 34546114 PCT