Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1613 ATGAGGAAGCGTCAAGTGGTGGTGAGAAGAGAGGATCCTCAAAGAAACGTGAGGAGTGTGAAATATGGAGAATGCCAAAAGAACCACGCAGCTAATGTCGGAGGCTATGCTGTGGACGGTTGCAGGGAGTTCATGGCGAGCGGCGAGGAAGGGACAAGTGATTCTCTCGCTTGCGCCGCGTGTGGCTGCCACAGAAACTTCCACAAAAAAGAGGTGCAGACTGAAGGATCACACCTTCTTGTGCCCTATAGCTATTAG 258 0.5155 MRKRQVVVRREDPQRNVRSVKYGECQKNHAANVGGYAVDGCREFMASGEEGTSDSLACAACGCHRNFHKKEVQTEGSHLLVPYSY* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1613 85 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 73 - -
Lja2g1613 85 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Lja2g1613 85 PANTHER MINI ZINC FINGER PROTEIN 2-LIKE 10 73 - -
Lja2g1613 85 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 72 IPR006456 -
Lja2g1613 85 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1613 Lja-Chr2 15880612 15882536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1613 1 75 Zinc finger-homeobox gene family AT3G28917 65.517 2.05e-33 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja2g1613 ZF-HD_dimer 3.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1613 - - lja:Lj5g3v2258280.1 151.754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1613 2 15880612 15882536 Lja2g1613 2 15880612 15882536 ECH