Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1612 ATGGAGGTATTAACAACCGCCACAAACAACATCACTAGCACTGCGAAATCGCCAGAACCCGAAACAGAAACACCGACCCGGATCCAACAACCCGGAAACGTAAACGCAACCGCAAAGCCGTTATCATTCTCCAACGGCGTTCTCAAGCGCCACCACCCTCCGGCGCCACATGCAAACCACTCTCCGGTGACGGTGACCTACAAGGAATGCTTGAAGAATCACGTCGCCAGCTTGGGTGGCCACGCGCTTGACGGCTGCGGCGAGTTCATGCCATCCCCCACCGCCACCGCCGATGACCCGAGCTCAATCAAGTGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGGGAACCCGAAGAGCCGCCGATTACCGCCGCGCATCATGTTTTCGAGTACCAGCCGCACCACCGCCACCACCCTCCACCTCCGGTTCCGTTCAACCGGAGCCCCAATTCGGCGTCTCCGCCGCCGATCTCGTCCTACCCATCCGCCCCGCACATGCTACTTGCCTTATCCGGGGCGGGGCTCCCCGTCCCGCCGGAGAACACCGCCGCGCCGACGCAGACCCCTGGCTCCGATTCCCGGAAGCGGTTCAGGACGAAATTCACGCCGGGGCAGAAGGAGAAGATGCTGGAGTTTGCGGAGAGGGTTGGGTGGAAGATGCAGAAGAGGGATGAAGATTTGGTCATGGAGTTCTGCAATGAGGTCGGTGTTGACAGAGGGGTTCTCAAGGTCTGGATGCACAACAACAAGAACACGTTCGGGAAACGGGATCATGCTGCTGCTAACGGCGGCGCTGGCGGCGGAGATGACGACGGAGCTGGTGGTGGTGAACGCGCAATCAACGGTAACGGTAACGGCAGTGCTGCTTCACAGGATCCGAATCAGTATGAGAATGATAGCGGGACTAACGGTGCTACTAATGGGTCTTCTTCTTCTTCTTAA 948 0.5949 MEVLTTATNNITSTAKSPEPETETPTRIQQPGNVNATAKPLSFSNGVLKRHHPPAPHANHSPVTVTYKECLKNHVASLGGHALDGCGEFMPSPTATADDPSSIKCAACGCHRNFHRREPEEPPITAAHHVFEYQPHHRHHPPPPVPFNRSPNSASPPPISSYPSAPHMLLALSGAGLPVPPENTAAPTQTPGSDSRKRFRTKFTPGQKEKMLEFAERVGWKMQKRDEDLVMEFCNEVGVDRGVLKVWMHNNKNTFGKRDHAAANGGAGGGDDDGAGGGERAINGNGNGSAASQDPNQYENDSGTNGATNGSSSSS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1612 315 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 8 265 - -
Lja2g1612 315 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 118 IPR006456 -
Lja2g1612 315 Pfam ZF-HD protein dimerisation region 65 119 IPR006456 -
Lja2g1612 315 MobiDBLite consensus disorder prediction 285 315 - -
Lja2g1612 315 MobiDBLite consensus disorder prediction 1 33 - -
Lja2g1612 315 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 196 253 IPR006455 -
Lja2g1612 315 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 118 IPR006456 -
Lja2g1612 315 MobiDBLite consensus disorder prediction 255 315 - -
Lja2g1612 315 Gene3D - 182 256 - -
Lja2g1612 315 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 265 - -
Lja2g1612 315 MobiDBLite consensus disorder prediction 135 204 - -
Lja2g1612 315 MobiDBLite consensus disorder prediction 140 163 - -
Lja2g1612 315 SUPERFAMILY Homeodomain-like 187 257 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1612 Lja-Chr2 15865569 15867269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1612 1 252 ZF-HD Transcription Factor Family AT5G15210 52.344 1.78e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja2g1612 ZF-HD_dimer 5.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1612 - - lja:Lj2g3v1058120.1 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1612 2 15865569 15867269 Lja1g2867 1 34476077 34477697 PCT