Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1605 ATGATACTTTATAAGATTAGTCTCTCACATATCTATTGGAAAATGGCTCATCTAATTGGCTTTCTTCTTGTGGGATTCATCTCCATTGTCTCATTTGTTCATGGACATGGCAATGGGAAGAGCAGTGGAGGTTGGACTAATGCACATGCCACCTTCTATGGTGGCAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACTTGTACAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCCTTATTCAACAATGGCTTGAGCTGTGGTGCATGCTATGAAATTAAATGTGTAAATGACCCAAAATGGTGCCTCCCTGGCTCCATTGTAGTCACTGCCACTAATTTCTGCCCACCTGGGAGTTGGTGTGACCCTCCCAAACACCATTTTGATATTTCTCAGCCTGTTTTCCAGCACATTGCCCAGTATAGAGCTGGTATTGTTCCTGTAGCTTACAGAAGGGTAAGGTGCAGAAGAAGAGGTGGAATCAGGTTCACCATCAATGGCCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTCGGAGGTGCTGGTGATGTGCATGCTGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGCCAAAACTGGCAGAGCAACTCCTACCTGAATGGACAGAGCCTTTCCTTTTTAGTCACCACTAGTAATGGCCATAGTGTGGTCTCATTCAATGTTGCCCCACCAAGTTGGGCCTTTGGACAGACCTACACTGGAAGGCAGTTTCGCTACTAA 786 0.4593 MILYKISLSHIYWKMAHLIGFLLVGFISIVSFVHGHGNGKSSGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPKWCLPGSIVVTATNFCPPGSWCDPPKHHFDISQPVFQHIAQYRAGIVPVAYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSNGHSVVSFNVAPPSWAFGQTYTGRQFRY* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1605 261 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Lja2g1605 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Lja2g1605 261 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Lja2g1605 261 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Lja2g1605 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Lja2g1605 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Lja2g1605 261 Gene3D - 34 163 IPR036908 -
Lja2g1605 261 SMART dpbb_1 80 157 IPR007112 -
Lja2g1605 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Lja2g1605 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 167 IPR007112 -
Lja2g1605 261 PANTHER EXPANSIN 20 260 - -
Lja2g1605 261 PANTHER EXPANSIN-A15 20 260 IPR002963 GO:0009664
Lja2g1605 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Lja2g1605 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Lja2g1605 261 PRINTS Expansin signature 114 124 IPR002963 GO:0009664
Lja2g1605 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Lja2g1605 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Lja2g1605 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Lja2g1605 261 PRINTS Expansin signature 102 113 IPR002963 GO:0009664
Lja2g1605 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Lja2g1605 261 PRINTS Expansin signature 75 89 IPR002963 GO:0009664
Lja2g1605 261 Gene3D - 167 259 IPR036749 -
Lja2g1605 261 SUPERFAMILY Barwin-like endoglucanases 44 185 IPR036908 -
Lja2g1605 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Lja2g1605 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Lja2g1605 261 Pfam Lytic transglycolase 80 157 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1605 Lja-Chr2 15786217 15789106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1605 18 260 Expansin Gene Family AT2G03090 76.096 2.39e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1605 K20628 - jre:108985949 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1605 2 15786217 15789106 Lja1g5534 1 95611196 95613735 ECH
Lja2g1605 2 15786217 15789106 Lja4g2138 4 22951568 22953976 ECH
Lja2g1605 2 15786217 15789106 Lja2g1605 2 15786217 15789106 ECH
Lja1g2842 1 34215522 34217940 Lja2g1605 2 15786217 15789106 ECH
Lja2g1171 2 11133267 11134966 Lja2g1605 2 15786217 15789106 ECH