Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1604 ATGTCTGCGTCAACAGCGCAACAGTTCCGGTACAATCAAACACCTTCGAAGGTGCTGCACTTCCGCAACCTTCCATGGGAGTGCACGGAAGACGAGCTCGTTCAACTGTGTTGCCCCTTCGGCCAGGTCATGAACACCAAGTGCAATGTTGGCGCCAATAAGAATCAAGCTTTTGTTGAATTCGGGGATCTAAATCAAGCCATTTCAATGGTTTCATATTATGCTTCATCTTCAGAGCCTGCTCAGGTTCGAGGCAAAACTGTTTACATTCAATATTCCAATAGACATGAAATTGTCAACAATAAAGCCCCTGGAGATGTCCCTGGAAATGTCTTGCTAGTAACCATGGAAGGCGTAGAAGCTGGAGATGTGACAATCGATGTTATCCACTTGGTGTTTTCTGCATTTGGCTTTGTACACAAAATCGCTACATTTGAAAAGACTGCAGGTTTCCAGGCTTTGATTCAGTTCACTGATGCTGAGACTGCTTCTTTGGCTAGGAATGCACTGGATGGAAGAAGCATACCCAGTTACTTGCTCCCACAGCATGTTGGTTCTTGTAACTTGCGTATTTCATACTCAGCACATAGAGATCTCAATATCAAATTCCAATCTAATCGCAGCAGGGACTACACAAATCCAATGCTTCCTGTTAATCAGACTGCTATTGACGGGGCATTACAGCCTGTTGTTGGTCCTGACGGGAAGAGAACCGAATCTGAGAGCAATGTGCTTTTGGCTACAATTGAAAATATGCAGTACGCTGTCACTGTGGAAGTTCTTCACACGGTGTTTTCTGCATTTGGCACTGTGCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTGATTCAATACCCTGATGTCACAACAGCAGCAGCTGCCAAAGAAGCTTTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTAACATACTCTCGTCATACTGATCTCAATGTAAAGGCTTACAGTGACAAAAGCAGAGACTATACAGTGTTGGATCCTAGTCTCCGTGCAGCACAAGTTCCTGCAACAGCATGGCCGAATCCTCAGGCTGCTCCTATGTACCCTGGTAGTGCCCCTGCATTACAGGGTCAAGTATCCGGTGGACAAATGTCATCATGGGATCCGGCCCATCAGGAAGTTAGCCAAAGTTATATACCCGCACCTGGTACTTTTCCCGGTTATTCCCCAGCAGCAACATCAAGCAACCATTTAGTTCATAATGCAAGTTCTATGGGAATCACTCAGAATGTACATTCACAGCCCAGTGTTGCTTCACCTCCAGGTCCTGGTTCCTCACCTCATACACAACCCAGTTCATTTGCTGGTCTTCAACATTATCATGGTTAG 1374 0.4512 MSASTAQQFRYNQTPSKVLHFRNLPWECTEDELVQLCCPFGQVMNTKCNVGANKNQAFVEFGDLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKAPGDVPGNVLLVTMEGVEAGDVTIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASLARNALDGRSIPSYLLPQHVGSCNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQTAIDGALQPVVGPDGKRTESESNVLLATIENMQYAVTVEVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTTAAAAKEALEGHCIYDGGYCKLHLTYSRHTDLNVKAYSDKSRDYTVLDPSLRAAQVPATAWPNPQAAPMYPGSAPALQGQVSGGQMSSWDPAHQEVSQSYIPAPGTFPGYSPAATSSNHLVHNASSMGITQNVHSQPSVASPPGPGSSPHTQPSSFAGLQHYHG* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1604 457 SMART rrm1_1 18 91 IPR000504 GO:0003723
Lja2g1604 457 SMART rrm1_1 246 316 IPR000504 GO:0003723
Lja2g1604 457 PANTHER OS02G0789700 PROTEIN 2 435 - -
Lja2g1604 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 70 IPR000504 GO:0003723
Lja2g1604 457 CDD RRM3_PTBPH1_PTBPH2 242 338 IPR034794 -
Lja2g1604 457 MobiDBLite consensus disorder prediction 371 386 - -
Lja2g1604 457 CDD RRM2_PTBPH1_PTBPH2 109 203 IPR034793 -
Lja2g1604 457 Gene3D - 3 105 IPR012677 -
Lja2g1604 457 SUPERFAMILY RNA-binding domain, RBD 6 102 IPR035979 GO:0003676
Lja2g1604 457 SUPERFAMILY RNA-binding domain, RBD 123 212 IPR035979 GO:0003676
Lja2g1604 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 - -
Lja2g1604 457 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 435 - -
Lja2g1604 457 MobiDBLite consensus disorder prediction 424 457 - -
Lja2g1604 457 SUPERFAMILY RNA-binding domain, RBD 246 339 IPR035979 GO:0003676
Lja2g1604 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 322 IPR000504 GO:0003723
Lja2g1604 457 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
Lja2g1604 457 Pfam RRM-like domain 241 320 IPR021790 -
Lja2g1604 457 MobiDBLite consensus disorder prediction 360 386 - -
Lja2g1604 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Lja2g1604 457 Gene3D - 241 344 IPR012677 -
Lja2g1604 457 Gene3D - 109 221 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1604 Lja-Chr2 15769268 15775077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1604 10 180 Eukaryotic Initiation Factors Gene Family AT3G16380 25.967 4.36e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1604 K14948 - gmx:100792308 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1604 2 15769268 15775077 Lja2g1604 2 15769268 15775077 ECH