Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1601 ATGGAAGCAATGGTGAAGAATTTCTCCAGAGAGGGACAGCAGAAATTTAAATTGCCACCAGGATACAGGTTTCATCCAACTGATGAAGAGCTCATAACTCACTACCTCTCACAGAAGGTTCTTGACAGCAATTTCTGTGCTATAGCAATTGCAGAAGCTGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGGATGGCCAAAATGGGTGAAGGTGAGTGGTATTTTTTCTGCATGAGGGACAGAAAATACCCAACTGGTTTGAGGACAAACAGGGCCACTAGTGCTGGCTATTGGAAGGCCACAGGCAAAGACAAGGAGATATACAGGGGAAAGACACTGATTGGAATGAAGAAAACACTGGTTTTCTACAAAGGAAGAGCTCCAAGAGGTGAAAAATCAAACTGGGTCATGCATGAATATAGATTGGAGGAGGACAAACAGTCTGTGCAGAATCTCCCCAAACCTGCTATGAAGGACTGGGCTATCTGCAGAGTTTTTGAGAAGGGTGCTCATGGAAAGAAAATGCATGTTCCTTTTAGCCCTTTTGCAAAGGAAGTACTACTGCCTCCATTGATGGAATCTTCTCCATACAACAGTGAAACTACTAAAACTGCTATTGGGGAATCATCACATCACTCACATGTGACATCCTTCTCAGACCCAAATCAAACTGATGAACAAAGGACAACACAAGATGACATAGTTGATAGCCTTGAAACTCCAATGATAACATCTTCATATTCTTCAAACCCCTCTGATATTTCCCCTGCTCCTTGGAATTTTATCAATGTTGCCCCCACTGTGCCCCACCAATCCACACAAATTGCACAAGTTGGGATTTCACAGGGCTCAGATTATCTCATGGTTCAAGAAGAGTCCATGCTGGGGATGTTGATTGAAAACCAAGGATCAAGTACAGAGACAAAGTATCAGAAAGCTCAGGAAAGGGACTTTGATGCTGACAACTCCTCTGTGATGTACAACAATCAAATGTTCCCAATGAATCAGGAATTTTCATCAGCTTCTGTAGGACAGCATGTGGACACTGGTTTTCTGTGGAATTTCTAA 1071 0.4267 MEAMVKNFSREGQQKFKLPPGYRFHPTDEELITHYLSQKVLDSNFCAIAIAEADLNKCEPWDLPWMAKMGEGEWYFFCMRDRKYPTGLRTNRATSAGYWKATGKDKEIYRGKTLIGMKKTLVFYKGRAPRGEKSNWVMHEYRLEEDKQSVQNLPKPAMKDWAICRVFEKGAHGKKMHVPFSPFAKEVLLPPLMESSPYNSETTKTAIGESSHHSHVTSFSDPNQTDEQRTTQDDIVDSLETPMITSSYSSNPSDISPAPWNFINVAPTVPHQSTQIAQVGISQGSDYLMVQEESMLGMLIENQGSSTETKYQKAQERDFDADNSSVMYNNQMFPMNQEFSSASVGQHVDTGFLWNF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1601 356 ProSiteProfiles NAC domain profile. 18 169 IPR003441 GO:0003677|GO:0006355
Lja2g1601 356 PANTHER NAC DOMAIN-CONTAINING PROTEIN 92-LIKE 12 319 - -
Lja2g1601 356 Gene3D NAC domain 27 173 IPR036093 GO:0003677|GO:0006355
Lja2g1601 356 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Lja2g1601 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 319 - -
Lja2g1601 356 MobiDBLite consensus disorder prediction 198 231 - -
Lja2g1601 356 MobiDBLite consensus disorder prediction 198 226 - -
Lja2g1601 356 SUPERFAMILY NAC domain 9 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1601 Lja-Chr2 15743213 15745148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1601 18 356 NAC Transcription Factor Family AT5G07680 49.128 3.38e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g1601 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1601 - - lja:Lj2g3v1068420.2 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1601 2 15743213 15745148 Lja2g1601 2 15743213 15745148 ECH
Lja1g2837 1 34185373 34186759 Lja2g1601 2 15743213 15745148 ECH