Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1600 ATGGGAAGATCACAATGTTGCGACAAGGTTGGTTTAAAGAAAGGACCGTGGACTCCAGAGGAAGATCAGAAGCTTTTAGCTTACATTGAAGAGCATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGACTTCAAAGGTGTGGCAAGAGTTGTAGACTGAGATGGACCAATTATCTTAGACCTGATATTAAGAGAGGGAAGTTCAGTTTGCAAGAAGAGCAAACCATCATTCAACTCCATGCCCTCTTAGGGAACAGGTGGTCAGCTATAGCCACACACTTACCAAAGAGAACAGACAACGAGATCAAGAACTATTGGAACACACATCTCAAGAAAAGGTTAACTAAAATGGGAATTGATCCGGTGACCCACAAGCCCAAGAATGACGCACTTCTCTCCAGCGACGGCCAGTCCAAAACCGCCGCTAACCTCTCCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCAGAAGCAAGACTTGTTAGGGAATCAAAACTTCGTTCACATTCGCTCCAAAACCACCACCTTGGAAGTTCTCATCATCATGTTTTTGCATCTTCATCTTCTGCTTCAACTAATTCAGCCCCAATCCCAAACAACACCAACAAATTAGAAGCACCACCACTGCCGCCCACTGCAGTGGCTATGATTGAGTTTGTGGGCACTAATTCAGGTTCTTCTGAGACAGGAGGAGGAGTTGTGAAAGAAGAAGGTGAGCAGTGGAAAGGTTATCATGAGAGTTCAATGACTTTCACTTCTGGATTTCATGAGTTCATGGAAGGTGTTGTTGGAGATGATGTTGTTGAAGAAGGGTTCACCAATCTTCTACTTAAAACAAACTCCGATGACTCGGAAGGCGGCGGAGAATCTAACAATGGTGGTCGTGGGAGTGGCAGTGATTTCTATGAAGCTGATAACAATAACTACTGGAGCAGCATTCTTAATTTAGTGAACTCTTCACCATCAGATTCTCCAATGTTCTGA 993 0.4522 MGRSQCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQNHHLGSSHHHVFASSSSASTNSAPIPNNTNKLEAPPLPPTAVAMIEFVGTNSGSSETGGGVVKEEGEQWKGYHESSMTFTSGFHEFMEGVVGDDVVEEGFTNLLLKTNSDDSEGGGESNNGGRGSGSDFYEADNNNYWSSILNLVNSSPSDSPMF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1600 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja2g1600 330 CDD SANT 69 112 IPR001005 -
Lja2g1600 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja2g1600 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja2g1600 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 182 - -
Lja2g1600 330 CDD SANT 16 61 IPR001005 -
Lja2g1600 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja2g1600 330 PANTHER TRANSCRIPTION FACTOR MYB106 1 182 - -
Lja2g1600 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja2g1600 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja2g1600 330 SMART sant 66 114 IPR001005 -
Lja2g1600 330 SMART sant 13 63 IPR001005 -
Lja2g1600 330 MobiDBLite consensus disorder prediction 281 303 - -
Lja2g1600 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja2g1600 330 Gene3D - 13 66 - -
Lja2g1600 330 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1600 Lja-Chr2 15719017 15721212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1600 1 330 MYB Transcription Factor Family AT3G01140 58.152 5.15e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g1600 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1600 K09422 - zju:107412894 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1600 2 15719017 15721212 Lja2g1600 2 15719017 15721212 ECH