Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1595 ATGGAAGGAGTAGGAGGATCCTTAGGTGTGAGAAAAGGAGCTTGGAGTAAAGTGGAAGATGATCTTCTAACGGCTTGTGTACTTAAATATGGGGAAGGAAAATGGCACCTTGTACCCTCAAGAGCAGGGTTGAACAGATGCCGCAAAAGCTGTAGATTGCGGTGGTTGAACTACCTGAAGCCGAGTATTAAGCGGGGAGAGTTCAGTGAGGATGAAGTTGACATGATGAAAAGATTGCACAGACTTTTGGGAAACAGATGGTCCCTGATTGCTGGAAGACTTCCCGGTAGAACTCCTAATGATGTGAAGAACTTCTGGAACACCAACGTTCGCAAGTCGAAGGTATCATCTCGTAAGGAAGAGATTCAATATGCAGAGCCAAAAGAAACAGTGAAACCCCACTCAGTGATTAAGCCTCAGACTCGAACTTTGTCAAAACCTTCACCCTGCAGCTTGAGGAAGTGGTTCCCAAGCAAAGATCAAGATGGGACCACACAGTGCCATATAACTCAACCATGTGCAGCTTCAACAGAGTGCAATGATAATCATAATAATAATGCTAAAGATAAGTGGTTGGGAACTGCAATTGGAGATAATGGAAGCAACCTGGAGAATGATAAATACTTCTCAGGAAACCAAGACTGGACGCTCATGAAAGACTTTAACTTGGATGAGGAGCTTCCTACCGACTTTCTTATTGAAGATCAAAGTTGGAGTGATTTTTTTCTTGATATCAATTTGTGGGATCTATGA 753 0.4303 MEGVGGSLGVRKGAWSKVEDDLLTACVLKYGEGKWHLVPSRAGLNRCRKSCRLRWLNYLKPSIKRGEFSEDEVDMMKRLHRLLGNRWSLIAGRLPGRTPNDVKNFWNTNVRKSKVSSRKEEIQYAEPKETVKPHSVIKPQTRTLSKPSPCSLRKWFPSKDQDGTTQCHITQPCAASTECNDNHNNNAKDKWLGTAIGDNGSNLENDKYFSGNQDWTLMKDFNLDEELPTDFLIEDQSWSDFFLDINLWDL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1595 250 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Lja2g1595 250 Gene3D - 67 130 - -
Lja2g1595 250 SMART sant 64 112 IPR001005 -
Lja2g1595 250 SMART sant 11 61 IPR001005 -
Lja2g1595 250 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Lja2g1595 250 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Lja2g1595 250 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Lja2g1595 250 CDD SANT 67 110 IPR001005 -
Lja2g1595 250 MobiDBLite consensus disorder prediction 117 135 - -
Lja2g1595 250 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 9 168 - -
Lja2g1595 250 Gene3D - 12 64 - -
Lja2g1595 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 59 IPR017930 -
Lja2g1595 250 CDD SANT 14 59 IPR001005 -
Lja2g1595 250 MobiDBLite consensus disorder prediction 117 145 - -
Lja2g1595 250 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 9 168 - -
Lja2g1595 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Lja2g1595 250 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1595 Lja-Chr2 15636728 15640343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1595 9 241 MYB Transcription Factor Family AT1G66370 44.033 2.79e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g1595 Myb_DNA-binding 5.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1595 - K09422 lja:Lj2g3v1068540.1 357.066