Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1590 ATGGCAGCTTTAGTATTGACCGTGTCACAAGATGGAACCGGGCACTACAGAACAGTGCAGGAAGCCATTGATGCAGTGCCACTCGGCAACACTCGCCGGACGGTGATTCGGGTGTCCCCGGGAATCTACAGACAGCCACTGTACGTGGCCAAGACCAAGAAATTCATCACCCTCGCTGGTGTGCGCCCTGAGGACACTGTTCTTACATGGAACAACACTGCCACCAGAATCGAGCACCACCAAGGTGCTCAGGTAATAGGGACTGGAACCTTTGGTTGTGGCAGCATCATTGTGGAAGGGGAGGACTTCATTGCTGAGAATATTACTTTTGAGAATTCTTCCCCTGAGGGTTCAGGGCAAGCAGTGGCAGTTAGGGTAACAGCAGACAGATGTGCATTCTATAATTGCAGATTCCTTGGATGGCAGGACACAGTGTATTTGCATTATGGCAAACAATATTTGAAAGACTGTTATATTGAAGGAAGTGTGGACTTCATTTTTGGTAATAGCACTGCACTCTTGGAGCACTGTCATATCCACTGCAAGTCTGCAGGGTTCATAACTGCACAGAGCAGAAAATCTCCACAGGAAACAACCGGTTATGTATTTCTGAGATGTGTTATCACAGGTAACGGAGGAACTTCATATGCATATCTTGGACGACCATGGGGACCTTTTGGAAGAGTTGTCTTTGCATTTACTTACATGGATCAATGTATAAAGCATGTTGGTTGGAATAATTGGGGAAAAATTGAGAATGAAAGAAGTGCTTGCTTCTATGAATACAGGTGCTTTGGACCGGGTTGCTGTCCATCCAAACGAGTAAAATGGGCTAGACAATTAATGGATAAAGAAGCAGAACAGTTTCTCATGCATGGCTTCATTGACCCCGAACCAAAGAGACCTTGGCTTGCTCAAAGAATGGCCTTGAGGATTCCATATTCTGCTTAG 951 0.4585 MAALVLTVSQDGTGHYRTVQEAIDAVPLGNTRRTVIRVSPGIYRQPLYVAKTKKFITLAGVRPEDTVLTWNNTATRIEHHQGAQVIGTGTFGCGSIIVEGEDFIAENITFENSSPEGSGQAVAVRVTADRCAFYNCRFLGWQDTVYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSPQETTGYVFLRCVITGNGGTSYAYLGRPWGPFGRVVFAFTYMDQCIKHVGWNNWGKIENERSACFYEYRCFGPGCCPSKRVKWARQLMDKEAEQFLMHGFIDPEPKRPWLAQRMALRIPYSA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1590 316 PANTHER PECTINESTERASE 1 315 - -
Lja2g1590 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
Lja2g1590 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Lja2g1590 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Lja2g1590 316 Gene3D - 3 309 IPR012334 -
Lja2g1590 316 SUPERFAMILY Pectin lyase-like 2 301 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1590 Lja-Chr2 15592726 15595985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1590 5 309 Carbohydrate Esterase AT5G47500 37.061 1.92e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1590 K01051 - tcc:18601567 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1590 2 15592726 15595985 Lja2g1590 2 15592726 15595985 ECH