Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1585 ATGGCAAGGAAAAGAAAGGTTTCTGAAGTGGTGGATGAGAGAAACCTATCTGAGGGTACCATGGCCTGGGATGAGATGTTAAAGCAAGCTGCAGAACTTGGAGGAGCAAGGAAAACCCGAAAGCGATTCGTTGGGGTGAGGCAAAGGCCATCTGGTAGATGGGTTGCTGAGATAAAAGACACCATTCAGAAGATAAGAGTATGGTTGGGAACTTTTGACACAGCTGAAGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCTTGCTTCGCGGCGCGAATACAAGGACAAACTTCTGGCCTTGCTCCCAATCTTCCTCAACTCCAGCACTTTCTTCAAAGATCACCAATCTCCTTCTCCAAAGGCTTAAAGAAAGAAACAACTCTTTCTCTTCTTCTTCCTCCATGTCTCTTCCTACCAACCTCCAACAAATGCAACAAGTAGATGCATATGGAGCAGGATCATCAACACAATTTTCAATTGACCAATTCACTGATTTCCTCAATGATCCGGAACCAGAAGATTATAGCTCAAGCAACCACACTTTCACCAAAAACAGTGCTGAAATTGATTACATTGCTAGTGGTTTCGAGTCATGCTTAACTGAAAAGGATAGCTTCAAAGGGGTAGAAATGGACATGGAATATAAATCCAGCAATGTGACACAAACTTCAAGCAATGACAGCAATTCAGGAGTGGAAAGAGAGGAAGAAAGTGAAGAAGAAAGTGTCCAAGGGACTAATTTGGATGTCCCAGATTTTCGATTTCTCGACACAGTTCCTCCACCAAGCTACTACTCTCCCTTTGAGATTGCTGAAGGGATGGAGGAGCCAGCAGAGGAAGCAGAGAACTATGCTGATGAGCCTTCAATGCTTAGAGCTGTGATGAAGAGGATGAAATATGAGAGGAAATTCTCAGCTTCTCTCTATGCCTTCAACGGGATACCTGAGTGCTTGAAGTTCACACTAGAATCAGGGAACATGAAGGGGAAAGGACTAATGGCTGATCAATTAGCCAGCCTCCAAACAGCTTGCAGAAAAAGCAAACTTGAGAAGAAGAATGTGGAGGAGAAAGAGTACATGATGGCAGCAAGGGATAATGGGAAAGAGGAAGAAAACCATCATCAAACATCAATTTACATGGATTCCTCTTCTTCATCTAGTGTTGATGAAGAACTGTTGCTCTGGAATTCACTTGATCTTTCTCCTATTTGCTTTGTTAACTTGCTGGAAAATGGTTCATTCAATTAG 1248 0.4311 MARKRKVSEVVDERNLSEGTMAWDEMLKQAAELGGARKTRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSSTPALSSKITNLLLQRLKERNNSFSSSSSMSLPTNLQQMQQVDAYGAGSSTQFSIDQFTDFLNDPEPEDYSSSNHTFTKNSAEIDYIASGFESCLTEKDSFKGVEMDMEYKSSNVTQTSSNDSNSGVEREEESEEESVQGTNLDVPDFRFLDTVPPPSYYSPFEIAEGMEEPAEEAENYADEPSMLRAVMKRMKYERKFSASLYAFNGIPECLKFTLESGNMKGKGLMADQLASLQTACRKSKLEKKNVEEKEYMMAARDNGKEEENHHQTSIYMDSSSSSSVDEELLLWNSLDLSPICFVNLLENGSFN* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1585 415 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 343 - -
Lja2g1585 415 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Lja2g1585 415 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Lja2g1585 415 Coils Coil 337 357 - -
Lja2g1585 415 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Lja2g1585 415 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Lja2g1585 415 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Lja2g1585 415 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 343 - -
Lja2g1585 415 MobiDBLite consensus disorder prediction 217 247 - -
Lja2g1585 415 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Lja2g1585 415 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Lja2g1585 415 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1585 Lja-Chr2 15558830 15560204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1585 36 118 AP2-EREBP Transcription Factor Family AT5G19790 69.880 6.46e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja2g1585 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1585 K09286 - gmx:100790398 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1585 2 15558830 15560204 Lja2g1585 2 15558830 15560204 ECH