LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g1583	ATGGGTTGCATTAACTCCAAGAGAGCGGTTGCCGGAGCCTCTCCTCCGCCGCCGATCGACGGTGAAATATTGGAGGCTCGTCTTGCTTCCAAGGGAAATTCAGGGTTGCTGGTTTTGGAACCTAAAAGTAAAACATCATCAGAAGATAGTAAGAACAAGTTCACCAAAAACAGCTCTAGAAGAAGTGGTTCTTCTTTCAGCTTCAGGCTTGGTTTTACCCATAGGTATGTGGAGGCTGAACAGAATGCTGCTGGTTGGCCTCCTTGGCTCACAGCTGCTGCAGCAGAAGCTGTTCAAGGTTGGATCCCCCTCAAAGCTGATTCTTTTCAGAAGTTAGAAAAGATTGGACAAGGTACATATAGCAGTGTGTTCAAAGCACGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGGTTTGACAATTTCCAAGCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATTCTCCGAAGACTTGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCCCGGCTATCAAATAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAATATCTCGTTCTGACATCTCATTCACCGATTCACAGATAAAATGTTACATGAGGCAGCTATTAAGTGGACTTGAGCATTGTCATGTTCGCGGTATTATGCATCGAGACATTAAAGTTTCAAACATCTTGTTAAACAATGAAGGTGTTCTCAAGATAGGAGATTTCGGATTAGCAAACACAATTAGCCCAAATAACAAGCATCAGTTAACAAGTCGTGTAGTGACTCTATGGTATCGTCCTCCTGAGCTCTTGATGGGATCAACCAATTATGGTGTATCAGTGGATCTGTGGAGTGTGGGTTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAAGGGAGAACTGAGGTTGAACAATTGCACAAAGTATTTAAGCTGTGTGGTTCTCCATCTGATGAGTACTGGAAAAAGTGCAAGCTTCCTCATGTAACAATGTTCAAACCTCATACTAATTATGAAAGCTCTCTTCGGGAGAGGTGTGCAGATTTTCCTGAATCTGCTGTAGACCTACTTGAAACTTTACTGGCCATTGATCCTAGCATGCGTGGGACTGCCTCCTCTGCCCTAATATCCGAGTATTTCAGCACCATGCCATATGCTTGTAATCCTTCAAGCCTGCCAAAGTATTCACCTAGCAAAGAAATGGATGCTAAAACTCGGGAAGATATATCCAGGAAAAAGACTGGAAGTAAAACGAGAGAGGCTGCGACATCAAGAAGGCAGCAAAGAAGAATATCTAAAGTTTTGCAAGAATCTAAAAATGCTGGCAAAACAGCTTCAAAAGAGGACAACTTGAACATTTCTCACAAAGCTCGTAGAGATGATGGTAAAACACATCATACAAAGGAAAAAGGAGGATCTGTGTACAAAGATTACTCAAAACCTTCAATGGATGCAATGTCAGAGACTTCCCAGCTGGCGAATGTTGCTGATGGTAATGGCTATAGTGTACCATTACAAGGCTCCGGATCTAACAACTTTACATGGGTAAAAAGGAGAAAACCAGATGCATCATCCACACTATCAGATGGCTCAAGAAGCAAAATTAGTGCATTGGATCCCAACTTTGCGAAAGGCACATATGATTTGTCCAAACAAAGGGTATCCATGGACTTCGATCCCAAAGAACTGGTAAATGCTCATAGAGCTGTCAATATGAGTTCCAACCCGCGGGCCAGCTCGACGGGTTGGCTAAATGAGCGGGTTGGGTTGGTTAAATTCCAGCTCGAAAAGAACTTGGGTTAG	1842	0.4283	MGCINSKRAVAGASPPPPIDGEILEARLASKGNSGLLVLEPKSKTSSEDSKNKFTKNSSRRSGSSFSFRLGFTHRYVEAEQNAAGWPPWLTAAAAEAVQGWIPLKADSFQKLEKIGQGTYSSVFKAREVETGKMFALKKVRFDNFQAESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLISRSDISFTDSQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISPNNKHQLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKVFKLCGSPSDEYWKKCKLPHVTMFKPHTNYESSLRERCADFPESAVDLLETLLAIDPSMRGTASSALISEYFSTMPYACNPSSLPKYSPSKEMDAKTREDISRKKTGSKTREAATSRRQQRRISKVLQESKNAGKTASKEDNLNISHKARRDDGKTHHTKEKGGSVYKDYSKPSMDAMSETSQLANVADGNGYSVPLQGSGSNNFTWVKRRKPDASSTLSDGSRSKISALDPNFAKGTYDLSKQRVSMDFDPKELVNAHRAVNMSSNPRASSTGWLNERVGLVKFQLEKNLG*	614

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja2g1583	613	MobiDBLite	consensus disorder prediction	462	488	-	-
Lja2g1583	613	ProSiteProfiles	Protein kinase domain profile.	109	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lja2g1583	613	Pfam	Protein kinase domain	109	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lja2g1583	613	MobiDBLite	consensus disorder prediction	404	501	-	-
Lja2g1583	613	Gene3D	Transferase(Phosphotransferase) domain 1	192	433	-	-
Lja2g1583	613	MobiDBLite	consensus disorder prediction	447	461	-	-
Lja2g1583	613	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	229	241	IPR008271	GO:0004672\|GO:0006468
Lja2g1583	613	MobiDBLite	consensus disorder prediction	38	64	-	-
Lja2g1583	613	MobiDBLite	consensus disorder prediction	1	21	-	-
Lja2g1583	613	Gene3D	Phosphorylase Kinase; domain 1	96	191	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g1583	Lja-Chr2	15538305	15544635	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g1583	101	433	Core Cell Cycle Gene Families	AT5G10270	47.278	8.69e-111	340

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Lja2g1583		Pkinase	3.3e-71	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g1583	-		-	gmx:100790917	904.434

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g1583	2	15538305	15544635	Lja2g1583	2	15538305	15544635	ECH
	Lja1g2822	1	33999947	34006233	Lja2g1583	2	15538305	15544635	ECH

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