Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1583 ATGGGTTGCATTAACTCCAAGAGAGCGGTTGCCGGAGCCTCTCCTCCGCCGCCGATCGACGGTGAAATATTGGAGGCTCGTCTTGCTTCCAAGGGAAATTCAGGGTTGCTGGTTTTGGAACCTAAAAGTAAAACATCATCAGAAGATAGTAAGAACAAGTTCACCAAAAACAGCTCTAGAAGAAGTGGTTCTTCTTTCAGCTTCAGGCTTGGTTTTACCCATAGGTATGTGGAGGCTGAACAGAATGCTGCTGGTTGGCCTCCTTGGCTCACAGCTGCTGCAGCAGAAGCTGTTCAAGGTTGGATCCCCCTCAAAGCTGATTCTTTTCAGAAGTTAGAAAAGATTGGACAAGGTACATATAGCAGTGTGTTCAAAGCACGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGGTTTGACAATTTCCAAGCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATTCTCCGAAGACTTGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCCCGGCTATCAAATAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAATATCTCGTTCTGACATCTCATTCACCGATTCACAGATAAAATGTTACATGAGGCAGCTATTAAGTGGACTTGAGCATTGTCATGTTCGCGGTATTATGCATCGAGACATTAAAGTTTCAAACATCTTGTTAAACAATGAAGGTGTTCTCAAGATAGGAGATTTCGGATTAGCAAACACAATTAGCCCAAATAACAAGCATCAGTTAACAAGTCGTGTAGTGACTCTATGGTATCGTCCTCCTGAGCTCTTGATGGGATCAACCAATTATGGTGTATCAGTGGATCTGTGGAGTGTGGGTTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAAGGGAGAACTGAGGTTGAACAATTGCACAAAGTATTTAAGCTGTGTGGTTCTCCATCTGATGAGTACTGGAAAAAGTGCAAGCTTCCTCATGTAACAATGTTCAAACCTCATACTAATTATGAAAGCTCTCTTCGGGAGAGGTGTGCAGATTTTCCTGAATCTGCTGTAGACCTACTTGAAACTTTACTGGCCATTGATCCTAGCATGCGTGGGACTGCCTCCTCTGCCCTAATATCCGAGTATTTCAGCACCATGCCATATGCTTGTAATCCTTCAAGCCTGCCAAAGTATTCACCTAGCAAAGAAATGGATGCTAAAACTCGGGAAGATATATCCAGGAAAAAGACTGGAAGTAAAACGAGAGAGGCTGCGACATCAAGAAGGCAGCAAAGAAGAATATCTAAAGTTTTGCAAGAATCTAAAAATGCTGGCAAAACAGCTTCAAAAGAGGACAACTTGAACATTTCTCACAAAGCTCGTAGAGATGATGGTAAAACACATCATACAAAGGAAAAAGGAGGATCTGTGTACAAAGATTACTCAAAACCTTCAATGGATGCAATGTCAGAGACTTCCCAGCTGGCGAATGTTGCTGATGGTAATGGCTATAGTGTACCATTACAAGGCTCCGGATCTAACAACTTTACATGGGTAAAAAGGAGAAAACCAGATGCATCATCCACACTATCAGATGGCTCAAGAAGCAAAATTAGTGCATTGGATCCCAACTTTGCGAAAGGCACATATGATTTGTCCAAACAAAGGGTATCCATGGACTTCGATCCCAAAGAACTGGTAAATGCTCATAGAGCTGTCAATATGAGTTCCAACCCGCGGGCCAGCTCGACGGGTTGGCTAAATGAGCGGGTTGGGTTGGTTAAATTCCAGCTCGAAAAGAACTTGGGTTAG 1842 0.4283 MGCINSKRAVAGASPPPPIDGEILEARLASKGNSGLLVLEPKSKTSSEDSKNKFTKNSSRRSGSSFSFRLGFTHRYVEAEQNAAGWPPWLTAAAAEAVQGWIPLKADSFQKLEKIGQGTYSSVFKAREVETGKMFALKKVRFDNFQAESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLISRSDISFTDSQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISPNNKHQLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKVFKLCGSPSDEYWKKCKLPHVTMFKPHTNYESSLRERCADFPESAVDLLETLLAIDPSMRGTASSALISEYFSTMPYACNPSSLPKYSPSKEMDAKTREDISRKKTGSKTREAATSRRQQRRISKVLQESKNAGKTASKEDNLNISHKARRDDGKTHHTKEKGGSVYKDYSKPSMDAMSETSQLANVADGNGYSVPLQGSGSNNFTWVKRRKPDASSTLSDGSRSKISALDPNFAKGTYDLSKQRVSMDFDPKELVNAHRAVNMSSNPRASSTGWLNERVGLVKFQLEKNLG* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1583 613 MobiDBLite consensus disorder prediction 462 488 - -
Lja2g1583 613 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1583 613 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1583 613 MobiDBLite consensus disorder prediction 404 501 - -
Lja2g1583 613 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Lja2g1583 613 MobiDBLite consensus disorder prediction 447 461 - -
Lja2g1583 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Lja2g1583 613 MobiDBLite consensus disorder prediction 38 64 - -
Lja2g1583 613 MobiDBLite consensus disorder prediction 1 21 - -
Lja2g1583 613 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Lja2g1583 613 CDD STKc_CDK9_like 109 393 - -
Lja2g1583 613 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Lja2g1583 613 SUPERFAMILY Protein kinase-like (PK-like) 104 399 IPR011009 -
Lja2g1583 613 PANTHER CELL DIVISION PROTEIN KINASE 1 582 - -
Lja2g1583 613 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1583 613 PANTHER CYCLIN-DEPENDENT KINASE 1 582 - -
Lja2g1583 613 MobiDBLite consensus disorder prediction 412 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1583 Lja-Chr2 15538305 15544635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1583 101 433 Core Cell Cycle Gene Families AT5G10270 47.278 8.69e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja2g1583 Pkinase 3.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1583 - - gmx:100790917 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1583 2 15538305 15544635 Lja2g1583 2 15538305 15544635 ECH
Lja1g2822 1 33999947 34006233 Lja2g1583 2 15538305 15544635 ECH