Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1572 ATGGCTGCAGCAAAACCCCAACGCACCCCACAGGAAGTGGAGGACATCATCATCCGCAAAATCTTCCTCGTCACCATCACCGAACCCGATGCCACCGCCACCACCGCCACCACCACCGACTCCAGAATCGTCTACATGGAGCAAACCGCGGCGGAGATTCTCAGCGAGGGGAAGGGCCTCCGTCTCTCGCGCGACACCATGGAGAGGATCCTCATCGATCGCCTCTCCGGCGACGCCGACGAATCGCCGTTCCACTACCTCTTCGGCTGCTACCAGCGCGCCTACGACGAGGCTAAGAAGATCGCCGGCATGAAGGACAAGGAACTCAGGGCGGAAATGGAGGTTGTTGTCAGGCAGGCGAAGAAGCTCTCTGTCTCCTACTGCAGGATTCATCTCGCGAACCCTGAGCTCTTCCCGAGCCGGAGCACTGCTAACGACGCTGGACACTCGCCGCTGCTGCCGCTGGTCCTCGCGGAGGTTGGTGGTGGGGGAATCGGAGGGTTTGGCGGAGGTGGTGGTGGAGTGAAGAGCCCACCGGGGTTTTTGGAGGAGCTGTTTAGGGATGCTGATTTTGATAGTTTGGACAGAATATTGAAAGGGTTGTATGAAGAGTTGAGGGGGAGTGTGATGAAGGTTTCTGCTCTTGGAAACTTTCAGGATTCTCTGAGGGCTTTGTTGTTTTTAGTCAGGTTCCCTGCTGGTGCAAAGTCTCTTGTGAGCCATCAATGGTGGATTCCCAAAGGGGTTTACATGAATGGTCGCGCCATCGAAATGACCAGCATTTTGGGGCCATTCTTCCATGTCAGTGCTCTCCCTGATCAAACCTTTTTCAGGAGCCTGCCTGATGTTGGACAGCAGTGTTTTTCTGATTCATCAACTCGGCGACAAGCTGATTTAGTATCCTCGTTTTCCACTATCAAAAATGTCATGAATAACTTGTATGGTGGCCTATCTGAAGTACTTCTCGTCCTCCTCAAAAGTTCAGATACTCGAGAAAATGTACTTGAGTATCTTGCAGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCGTCTCTGTGAACCTTTTTTAGATGCTAATTTAACAAAAAGGGATAAAATAGATCCAAATTATGTACACTACTCAAACCGTTTAAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAATTACTGAATGGCTTAATAGTAAAAACCCATCTAAGGCTGGGGGAATCGATCAATGTAATGATGATAAAAAACGCTTGCAACAATCTCAAGAGGCCAGTAGTTCTGGTAGTAATAATGCTGGTGGGCTTTCAAAAGAAAATTCTGCACGTGGTCAAAAGTCGAAATATTCATTTATTTGCGAATGCTTCTTTATGACGGCAAGAGTGCTCAACCTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGAAGTGAAGATGCTCTTTCCACACTTAAAGGCATGCAGGGGCACTCACCCTCTCCTCAGTTGGAATTGGATATATCTCGACTTGAGAAGGAACTGGAGTTGTACTCGCAGGAAAAGCTTTGTTATGAAGCTCAGATATTGAGGGATAACACGCTTATTCAGAATGCTCTTACGTTCTACCGCTTGATGATCGTTTGGTTGGTTGGCTTGGTTGGTGGATTCAAGATGCCTCTACCACAGACATGCCCAATGGAATTTGCTACCATGCCTGAGCATTTTGTAGAAGATGCCATGGAACTTTTAATATTTGCTTCCCGGATTCCTAGGGCCTTAGAGGGAGTCGTACTGGATGAGTTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGATTTTATCAAAAACCCATATCTGAGAGCAAAGATGGTTGAAGTCTTGAATTGCTGGATGCCCCGTACAAGTGGCTCATCTGCTACAGCTACTCTATTTGAAGGACACCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTTACCGGTTCTCACACACAGTTCTATGACAAATTTAACATCCGTCATAATATTGCTGAACTCCTTGAATACCTATGGAAGGTCCCTAGTCATCGTAATGCTTGGAGACAGATCGCTAAAGAGGAGGAAAAGGGTGTCTATTTGAATTTCTTGAACTTTCTGATTAATGATAGTATATATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAAGCTGAGATGTCAAATACAGCTGAGTGGGAAAGACGGCCAGTTCAGGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGAATAGATATGAAGTTGGCAAATGAAGATGTTAGTATGCTTGCATTTACTTCAGAACAGATTACTGTTCCATTCCTACTTCCAGAGATGGTGGAAAGAGTGGCTAGTATGCTGAATTACTTTCTGCTGCAATTGGTGGGTCCCCAAAGAAAATCGCTTAGTCTGAAAGATCCTGAGAAATATGAATTCCGTCCAAAGGATTTGCTAAAACAGATTGTGCACATATATATTCACCTGGCTAGAGGTGACACAAATGCTATCTTCCCAGCTGCAATCTCCAAAGATGGTAGATCATACAATGACCAGTTGTTTAGTGCTGGTGCAGATGTCCTACGTAGAATTGGTGAGGATCCGAAAGTTATACAGGAGTTTATTCAACTAGGTGCTAAAGCAAAAGTTGCTGCTTCAGAAGCCATGGATGCCGAAGCTACTCTGGGAGAAATACCAGATGAATTCCTTGATCCGATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGACATCTTCTTAGTGATGCTTCTGACCCATTCAACCGTTCTCATCTTACTGCGGATATGCTGATTCCTGATGTTGAACTAAAAGCACGAATTGAGGAGTTTGTCAGGTCTCAGGAAATGAAGAAACACGGTGAAGGGCTAAGCATACAGAGTAGTAGCAAGGCCACCATTCAGACCACAAATGGGGAAAAAATGTTGATTGATTAG 3132 0.448 MAAAKPQRTPQEVEDIIIRKIFLVTITEPDATATTATTTDSRIVYMEQTAAEILSEGKGLRLSRDTMERILIDRLSGDADESPFHYLFGCYQRAYDEAKKIAGMKDKELRAEMEVVVRQAKKLSVSYCRIHLANPELFPSRSTANDAGHSPLLPLVLAEVGGGGIGGFGGGGGGVKSPPGFLEELFRDADFDSLDRILKGLYEELRGSVMKVSALGNFQDSLRALLFLVRFPAGAKSLVSHQWWIPKGVYMNGRAIEMTSILGPFFHVSALPDQTFFRSLPDVGQQCFSDSSTRRQADLVSSFSTIKNVMNNLYGGLSEVLLVLLKSSDTRENVLEYLAEVININASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDPNYVHYSNRLKLSGLTALHASSEEITEWLNSKNPSKAGGIDQCNDDKKRLQQSQEASSSGSNNAGGLSKENSARGQKSKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDALSTLKGMQGHSPSPQLELDISRLEKELELYSQEKLCYEAQILRDNTLIQNALTFYRLMIVWLVGLVGGFKMPLPQTCPMEFATMPEHFVEDAMELLIFASRIPRALEGVVLDEFMNFIIMFMASPDFIKNPYLRAKMVEVLNCWMPRTSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWKVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKDLLKQIVHIYIHLARGDTNAIFPAAISKDGRSYNDQLFSAGADVLRRIGEDPKVIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDASDPFNRSHLTADMLIPDVELKARIEEFVRSQEMKKHGEGLSIQSSSKATIQTTNGEKMLID* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1572 1043 Pfam Ubiquitin elongating factor core 262 926 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Lja2g1572 1043 PANTHER - 1 1018 - -
Lja2g1572 1043 MobiDBLite consensus disorder prediction 1020 1043 - -
Lja2g1572 1043 PANTHER UBIQUITINATION FACTOR E4 1 1018 IPR045132 GO:0000151|GO:0030433|GO:0034450
Lja2g1572 1043 MobiDBLite consensus disorder prediction 443 462 - -
Lja2g1572 1043 CDD RING-Ubox_UBE4A 945 1013 - -
Lja2g1572 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 942 1020 IPR013083 -
Lja2g1572 1043 ProSiteProfiles U-box domain profile. 942 1016 IPR003613 GO:0004842|GO:0016567
Lja2g1572 1043 SMART Ubox_2 946 1009 IPR003613 GO:0004842|GO:0016567
Lja2g1572 1043 Coils Coil 521 548 - -
Lja2g1572 1043 MobiDBLite consensus disorder prediction 421 462 - -
Lja2g1572 1043 Pfam U-box domain 943 1014 IPR003613 GO:0004842|GO:0016567
Lja2g1572 1043 SUPERFAMILY RING/U-box 935 1015 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1572 1 1043 U-box Gene Family AT5G15400 74.288 0.0 1612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1572 K10597 - gmx:100811444 1746.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1572 2 15393325 15401264 Lja2g1572 2 15393325 15401264 ECH