Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1569 ATGCATTCTGCTGGAAAAGCTAGTTCTGGAAATAGTGATGAAAAAACTGTTCCTAATTATCTCAGAGCTTCCACTGGCTCCTGTCATGATTTTTGTAAATATGGGAGGAAGCATGCATTTGGATTGAAGGAAAGACGTTCTGTACCTAGTAGAGATACAAGAAAAAAGCTTCACCAAAGCTCAGAAGAGAGTATTGGTGGGATTGTGAAGTCAGTTGCCAGGCCAAGAGCATCGGTTGATTCCAAGATCTGTATTTCTGATACCTCTCCGCAGGAGCTGCCAACAAAATCAAATGACAGCCAAAAACATGTTGGTAATGAAATTCTGGTGAATAGGAACAAAACATCATCGGTCAAGGTCAAACCATCACTCCTACTGAAGTCCCGTAAATCTCCATCGATGAGACAAGAAATTTCATCATCATCTGTTAAGGAGGTGCAATCTTCATCAAAATCTATTTCCAGGAAGGTGAAAAGTCCATCAAAATCAACTCCGGAGAAGGTGGAGACTCCTTTGAAATCAACTCTCGAGAAGGTGGAAACTCCATCAAAATCAACTCTCAAGAAAGTGGTGACTCCGTCGAAATCAACTCCCAAGAAAGTGGAAACTCCATCAGAATCAACTCTCAAGAAGACGGGGACTCTGTCAAAGTCAGTTCCCAAGAAGATGGAAGCTTCATCAAAATCAGATTCCAAGAAGATGGAAAATTCATCAAAATCAACTTCCAAAGTCAAAACCTTACCAAAATCAACTTCCAAAATGGTGGGAGCTTCTTCACAGTTATCTTCTTTAAACGGTAAAGAAATGAACTTGTCTAGAAAGCGCGTCTCTTCTTTGAACCATGTCACTAGGAAGCAAATATCTTCCACAAATTCCTCAGAAGGATCTGGTAACCAGAAAAGTAGTGAGATCAAGATGGAAAAGCGGGTGGCCTCTTCCAAAGAAGCTTCAAGGAAACTGATTGCTCCTTCAAAAGCCTTATCATCTCCTAAACCTTCTCTTAGAAGAGTTGTAAGTATAAAGTCAAGAAAGCCCAATAGCCTAATAATCGTGTCTCATCTTAGGAGTCAGCAGACTTCCAAAAAAGTTGAACTTGGGGAACAAAACAAGGATGAGATAGAGGAAAAGACTTTGTATGTCATCCCAACAGAAAGTGGAAACAAAGCTTTGCAATCTGATCAAAATGCAAACTATGATGATGAATCGTGTCTCCCTCCATTGTCCTCACCTAAATTTTCATCATCTTCAATTTCTCAATCCTTATCCCAAGAAGACCAAGAGGAATCTGAATATACATCTAGTGAATTTGAGCAGGATTCTTCTTCAGAAAACAGTGAAATGGAATCCATGGAAAATGAGGGGAAGTTGGATGTTAAGAAGAAAGGCAAGGCCAAGAAGGGCGGGGTTGTGTGTTCTGAGGACAAGGACGACCAAATGATAAAATTAAAGTTCAGAAGGGGAACAGTGGTTGATAATCAACTTGAGAGAAGTACTCCAAGGAGGCTTAAGTTTCGGAGAGCAAAACTCTTGGGAGAGAAAGCAAGTGTTAGAGATGAAGCCAAAAGGAGAAGCTTTAAAAAAAGGGATGAACCCTGTTCTGATGACAATGGTGCTGCCAGCCAAGAAAAGATTGTTCTGAGACACCAAGATACACAGGACAAGAAAGATTCACAGGGATTGCTTAATAATGTAATTGAGGAAACAGCAAATAAACTTGTTGAAGCTCGGAAAAGCAAGGTTAAAGCATTGGTTGGTGCCTTTGAAACTGTAATCTCTCTTCAGGAGAAAAAGCCTTCTACTAACAATGCCAGTTGA 1815 0.4028 MHSAGKASSGNSDEKTVPNYLRASTGSCHDFCKYGRKHAFGLKERRSVPSRDTRKKLHQSSEESIGGIVKSVARPRASVDSKICISDTSPQELPTKSNDSQKHVGNEILVNRNKTSSVKVKPSLLLKSRKSPSMRQEISSSSVKEVQSSSKSISRKVKSPSKSTPEKVETPLKSTLEKVETPSKSTLKKVVTPSKSTPKKVETPSESTLKKTGTLSKSVPKKMEASSKSDSKKMENSSKSTSKVKTLPKSTSKMVGASSQLSSLNGKEMNLSRKRVSSLNHVTRKQISSTNSSEGSGNQKSSEIKMEKRVASSKEASRKLIAPSKALSSPKPSLRRVVSIKSRKPNSLIIVSHLRSQQTSKKVELGEQNKDEIEEKTLYVIPTESGNKALQSDQNANYDDESCLPPLSSPKFSSSSISQSLSQEDQEESEYTSSEFEQDSSSENSEMESMENEGKLDVKKKGKAKKGGVVCSEDKDDQMIKLKFRRGTVVDNQLERSTPRRLKFRRAKLLGEKASVRDEAKRRSFKKRDEPCSDDNGAASQEKIVLRHQDTQDKKDSQGLLNNVIEETANKLVEARKSKVKALVGAFETVISLQEKKPSTNNAS* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1569 604 MobiDBLite consensus disorder prediction 42 473 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 1 20 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 129 222 - -
Lja2g1569 604 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 484 602 - -
Lja2g1569 604 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 2 198 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 82 122 - -
Lja2g1569 604 SMART CaM_binding_2 478 592 IPR012417 GO:0005516
Lja2g1569 604 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 224 480 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 448 473 - -
Lja2g1569 604 PANTHER EMB|CAB62594.1 484 602 - -
Lja2g1569 604 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 209 320 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 345 363 - -
Lja2g1569 604 Coils Coil 433 453 - -
Lja2g1569 604 PANTHER EMB|CAB62594.1 209 320 - -
Lja2g1569 604 PANTHER EMB|CAB62594.1 224 480 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 223 239 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 364 378 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 384 427 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 301 315 - -
Lja2g1569 604 Pfam Plant calmodulin-binding domain 481 592 IPR012417 GO:0005516
Lja2g1569 604 MobiDBLite consensus disorder prediction 515 536 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 42 61 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 240 300 - -
Lja2g1569 604 PANTHER EMB|CAB62594.1 2 198 - -
Lja2g1569 604 MobiDBLite consensus disorder prediction 515 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1569 Lja-Chr2 15348591 15352046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1569 504 590 Calmodulin-binding Proteins AT5G04020 36.364 4.96e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1569 - - mtr:MTR_6g013485 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1569 2 15348591 15352046 Lja2g1569 2 15348591 15352046 ECH
Lja1g2805 1 33688278 33694434 Lja2g1569 2 15348591 15352046 ECH
Lja2g1569 2 15348591 15352046 Lja1g2805 1 33688278 33694434 PCT