Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1556 ATGGATGTGACTGTGAGGAACCCTTTGGTGGGTGATTATGTTGCCGGCGACCATTTTCCGGTGGGCATGCGTATTCTTGCCGTTGATGGCGACCAAGCTTGTCTCAGAGTGTTGGAGAACCTTCTTCGCAAATGCAACTATAATGTGTTGTCGGGACACAATGACAAAGAACTGGTGATGAGTTGTGTTGTGTACGGCGCGTGTGACTATCTATCGAAACCTATTCGTATGGAAGAGATGAAGAACATATGGCAACATGTCGTGCGCAAGAAGATGATTGGTAGTGATCAGAATCAAGCTGCCAATAAGGATAAAACCTGCAATGTTGCTGGAGAAGGTAGTAGTTATGGTTGCACTGTATCAGAAAATAGAATGAGTCAGAAAAGGAAGGAACTAAGTGAGGATGAGAAACTAAAAGAAGACGATGAACAGTCATCTCGGAAGAAGGCTCGTTTGGTTTGGACTACTGATTTGCATTCTAAATTTGTTGCTGCAGTTCAGCAATTGGGTTTTGACAGGGCTGTTCCTAAGAAAATACTTAAATTGATGAATGTTGAAGGCCTTTCAAAGCAACATGTAGCTAGTCATCTGCAGAAATTTAAACTGAGTCTCAAAAATTCACCTAATCCGGCTAGTTTGAACATGGGAGGAAGTAGTGGTTCTTATCCATTCGTCCAGCCAATCCAGTCTGCAAATAAAACCTCAAATGCAACTCACTTATCTAGTTTTTCTGAAAATTTGTCTCCATTGAGTGAGGTTAACGATGATCAACTTGTTGACAAAAGTTTGAAGTTTTGCTCCTCTGGTTCTGGTGAATTTTCTGCCACAAGTGGTGTTGCTGATCCTGTACAGAATGCTAGAGCTGACGAGATGCAGAGGCAACAAAGTTTTTGGGAGAGTCTACTTAATAACACTATTTAG 921 0.4169 MDVTVRNPLVGDYVAGDHFPVGMRILAVDGDQACLRVLENLLRKCNYNVLSGHNDKELVMSCVVYGACDYLSKPIRMEEMKNIWQHVVRKKMIGSDQNQAANKDKTCNVAGEGSSYGCTVSENRMSQKRKELSEDEKLKEDDEQSSRKKARLVWTTDLHSKFVAAVQQLGFDRAVPKKILKLMNVEGLSKQHVASHLQKFKLSLKNSPNPASLNMGGSSGSYPFVQPIQSANKTSNATHLSSFSENLSPLSEVNDDQLVDKSLKFCSSGSGEFSATSGVADPVQNARADEMQRQQSFWESLLNNTI* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1556 306 Gene3D - 48 108 - -
Lja2g1556 306 ProSiteProfiles Response regulatory domain profile. 1 88 IPR001789 GO:0000160
Lja2g1556 306 Pfam Myb-like DNA-binding domain 153 200 IPR001005 -
Lja2g1556 306 PANTHER TWO-COMPONENT RESPONSE REGULATOR 50 207 IPR045279 GO:0009736
Lja2g1556 306 Gene3D - 145 206 - -
Lja2g1556 306 MobiDBLite consensus disorder prediction 118 148 - -
Lja2g1556 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 149 202 IPR006447 GO:0003677
Lja2g1556 306 MobiDBLite consensus disorder prediction 124 148 - -
Lja2g1556 306 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 49 IPR045279 GO:0009736
Lja2g1556 306 SUPERFAMILY Homeodomain-like 147 206 IPR009057 -
Lja2g1556 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 205 IPR017930 -
Lja2g1556 306 SUPERFAMILY CheY-like 22 94 IPR011006 -
Lja2g1556 306 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 49 - -
Lja2g1556 306 PANTHER TWO-COMPONENT RESPONSE REGULATOR 50 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1556 Lja-Chr2 15224961 15226749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1556 15 246 Response Regulator Gene Family AT2G25180 38.333 1.40e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja2g1556 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1556 - K14491 lja:Lj4g3v0668260.1 446.047