Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1540 ATGACAGAAACTATATTTAAGATGAATAAACGCGGTCCAACAGAAGCTGCAGATTTTCCATTAAAACAGGAAGGCCTTTCAAGTCATGATGATGATAAGGTCGCAAAGGCTTCAGCAGCGAGCTCATCAGCATCCTCACAATGGCTGAAGTTGAAGGATCCAAGGATTGTGAGAGTGTCTCGCGCCTTCGGAGGGAAAGACAGGCACAGCAAGGTGTGCACAATAAGAGGACTGAGAGACAGGAGAGTGAGACTATCAGTCCCCACTGCCATTCTCCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAAAGTTGTTGATTGGTTGCTCAATGCAGCTAAGCATGAAATTGATGAACTCCCACCTTTGCCTATTCCCCCAGGAAACATCACCCTTGGTTATCCATCTCTTGTTAGCCCAAATACAACTCTCTGGAAATCAAAGCCTAAAGAAGTAGTGGTTACTGAAAAAGACAATTGGGTAAGTAGAAATGAAGATGAGGATGTTAAACAAGGAAGCAATGAAGATGTTTTGCCAAACAATGTATTTCCAATTAGAGCAAATCATCCATCATTTCTTGGCTTGCTGAATACTGTTCATCCACTTGGTTATAATCAGTTTGAGCCTTCAGCTAATGTTGGTCATTTGGCAAACCTTGGATTTGTAAACCAAGGAGATATACCCAGCAATATTAATGCTGTGACTTTCCCTTCAACATTGACTTTATCAACTCAGCCATATTTTCCTTCACATGTGGGAGCAATGGAGATGGATCCAAGACAAATCAACCACTATCAAATGTTGAGTTCAAGTTCTCAGAATTTAACCATTTGTGATGATCTTCATTCATCTCAGCATCTCATGAGCCAATCTGGGAAACCATTCAGCTTTGTTGGGAAGTTCAACTTCAAGCAGAATTAG 930 0.4151 MTETIFKMNKRGPTEAADFPLKQEGLSSHDDDKVAKASAASSSASSQWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAILLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNITLGYPSLVSPNTTLWKSKPKEVVVTEKDNWVSRNEDEDVKQGSNEDVLPNNVFPIRANHPSFLGLLNTVHPLGYNQFEPSANVGHLANLGFVNQGDIPSNINAVTFPSTLTLSTQPYFPSHVGAMEMDPRQINHYQMLSSSSQNLTICDDLHSSQHLMSQSGKPFSFVGKFNFKQN* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1540 309 MobiDBLite consensus disorder prediction 1 40 - -
Lja2g1540 309 Pfam TCP family transcription factor 65 126 IPR017887 -
Lja2g1540 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 300 IPR005333 GO:0003700
Lja2g1540 309 ProSiteProfiles TCP domain profile. 65 123 IPR017887 -
Lja2g1540 309 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 16 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1540 Lja-Chr2 15083841 15088277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1540 48 270 TCP Transcription Factor Family AT3G02150 45.020 7.20e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja2g1540 TCP 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1540 - - aprc:113867214 355.14