Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1523 ATGGGTTCTACCGAGATTAACTGGGACCGGCTAGATAAAACGAAGTTCTATGTCGTGGGAGCTGGACTGTTTACGGGTGTCACTGTGGCGCTCTACCCTATCTCTGTTGTGAAGACTAGGCTGCAGGTTGCCTCAAAGGAAACTATGGAGAGAAGTGCACTTTCTGTTGTGAAAGGATTGCTTAGAACGGATGGTATACCTGGTTTGTATAAAGGGTTTGGAACGGTCATCACTGGTGCAATTCCTGCCAGAATCATATTCCTCACTGCCTTAGAGACAACAAAGGCTGCTTCCTTCAAGATGATCGAGCCGTTTAAACTATCTGAAACGGCCCAGGCTGCCATAGCAAATGGATTTGCGGGAATGACATCATCGCTTATGTCACAAGCCGTGTTTGTTCCAATTGATGTGATTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCCCAGTATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGATGGCATCAGGGGATTATATAGAGGCTTTGGTCTATCTGTTATGACTTATTCGCCATCTACCGCTGTATGGTGGGCGAGTTATGGCTCAAGTCAGCGCTTGTTATGGAGGTTCTTGGGAGATGGTGACAAAAATGAGAAAGACACTCCTAGTCTGCCGAAGATTATTTTTGTTCAGGCTGCTGGAGGGATTATTGCTGGTGCTACTGCATCCTGCATCACAACCCCATTGGATACTATCAAGACAAGGTTACAGGTGATGGGACATGAACAGAGAAGCTCTGTAAAACAAGTTGTTAAAGACTTAATCAAAGAAGATGGTTGGAAAGGTGTATATAGAGGATTAGGTCCAAGATTTTTCAGCATGTCTGCATGGGGTACTTCAATGATATTGGCTTATGAATATCTGAAGCGTTTGTGTGCAAAAGATGATGAGACAGCTGGTCTGCAAACTGGTATTATTTCAATTGATTAG 972 0.4444 MGSTEINWDRLDKTKFYVVGAGLFTGVTVALYPISVVKTRLQVASKETMERSALSVVKGLLRTDGIPGLYKGFGTVITGAIPARIIFLTALETTKAASFKMIEPFKLSETAQAAIANGFAGMTSSLMSQAVFVPIDVISQKLMVQGYSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYSPSTAVWWASYGSSQRLLWRFLGDGDKNEKDTPSLPKIIFVQAAGGIIAGATASCITTPLDTIKTRLQVMGHEQRSSVKQVVKDLIKEDGWKGVYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDDETAGLQTGIISID* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1523 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 305 IPR018108 -
Lja2g1523 323 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 311 - -
Lja2g1523 323 Gene3D Mitochondrial carrier domain 17 315 IPR023395 -
Lja2g1523 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 200 IPR018108 -
Lja2g1523 323 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 1 311 - -
Lja2g1523 323 SUPERFAMILY Mitochondrial carrier 9 302 IPR023395 -
Lja2g1523 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 97 IPR018108 -
Lja2g1523 323 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Lja2g1523 323 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Lja2g1523 323 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Lja2g1523 323 Pfam Mitochondrial carrier protein 21 98 IPR018108 -
Lja2g1523 323 Pfam Mitochondrial carrier protein 223 309 IPR018108 -
Lja2g1523 323 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1523 Lja-Chr2 14938424 14943421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1523 6 310 Chloroplast and Mitochondria Gene Families AT5G15640 78.176 9.35e-177 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1523 K15121 - gmx:100819519 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1523 2 14938424 14943421 Lja2g1523 2 14938424 14943421 ECH
Lja2g1523 2 14938424 14943421 Lja1g2740 1 32777241 32782500 PCT