Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1521 ATGATGTTCCTTCCCATGATTCGGTTTTTCCTCAAACCGTATCCATGCACTCTGCTCTTGCTTCTGCTGACATGCACTTGCTACCCTTCATCAGAAGCTTATGATCCACTTGACCCATATGGAAACATCACAATCAAATGGGATGTTAAAAGCTGGACAGGTGATGGTTATCTTGCTATTGTTACAATTTACAACTTCCAACAATATCGTCATATCTCAGCACCTGGGTGGTCACTAGGATGGACATGGGCAAAGAAGGAGGTAATATGGAACATGATGGGAGGGCAGACCACCGAGCAAGGAGATTGTTCAAAATTTAAGGGAGAACAGATCCCACATTGCTGCAAAAAGGATCCAATTGTTGTAGATCTACTTCCGGGAACACCTTACAATCAACAAGTTACAAGTTGTTGCAAAGGTGGTGTCCTCAGCTCATGGAAACAAGATCCAATCAATGCTGTTGCCTCATTTCAAGTTGTTGTGGGTAGAGCTGGTACCACAAACAAAACTGTCAAATTGCCCAAAAACATCACCTTGAAAGCACCAGGACCAGGTTATACATGTGGACCAGCAAAAATTGTGAAACCCACCCGATTTATAACACCTGACAAAAGGAGAGTTACCCAAGCACTTATGACTTGGAATGTGACATGCATGTATTCACAATTTCTAGCTCAGAAAGCTCCTACTTGTTGTGTGTCCCTCTCATCTTTCTATAATGATACTGTTGTATCCTGCCCAACATGTGCATGTGGCTGCCAAGGAAACTCATCACAATCAGGGAACTGCGTAGATCCAGATTCGCCACATTTGGCATCAATTGTTTCCAACCCTGGAAATAATAGCATTAAACCTTTGGTTCGATGCACTAACCATATGTGCCCAATTCGAGTTCACTGGCATGTGAAGCTAAACTACAAGGAGTACTGGAGAGTGAAGGTCACCATTACTAATTTCAATTACAGGATGAATTATTCTGATTGGAACTTAGTAGTCCAACACCCAAACTTTGACAATTTGACCCAGCTTTTTAGTTTCTACTACGCGTCATTAACTCCCTACGGGGCAATAAATGATACAGCAATGCTTTGGGGAATTAAGTTCTACAATGATTTACTCATGCAAGCTGGCCCTCTTGGTAATGTACAGTCAGAGCTACTTTTCAGAAAGGATAAGTCAACTTTTACTTTTCATGAAGGTTGGGCTTTTCCTCGGAGGATCTATTTCAATGGTGACAATTGTGTGATGCCACCACCTGATGCTTATCCATGGTTACCTAATGCCGGTTCGCAGCAAAAGGTTTCCCTACTTGCTTTGATGTTGACTTTTTTGGTAACCTTGGTATTTTATTCCTATGTTTGA 1362 0.4185 MMFLPMIRFFLKPYPCTLLLLLLTCTCYPSSEAYDPLDPYGNITIKWDVKSWTGDGYLAIVTIYNFQQYRHISAPGWSLGWTWAKKEVIWNMMGGQTTEQGDCSKFKGEQIPHCCKKDPIVVDLLPGTPYNQQVTSCCKGGVLSSWKQDPINAVASFQVVVGRAGTTNKTVKLPKNITLKAPGPGYTCGPAKIVKPTRFITPDKRRVTQALMTWNVTCMYSQFLAQKAPTCCVSLSSFYNDTVVSCPTCACGCQGNSSQSGNCVDPDSPHLASIVSNPGNNSIKPLVRCTNHMCPIRVHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNLVVQHPNFDNLTQLFSFYYASLTPYGAINDTAMLWGIKFYNDLLMQAGPLGNVQSELLFRKDKSTFTFHEGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSQQKVSLLALMLTFLVTLVFYSYV* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1521 453 PANTHER COBRA-LIKE PROTEIN 9 451 - -
Lja2g1521 453 Pfam COBRA-like protein 57 221 IPR006918 GO:0010215|GO:0031225
Lja2g1521 453 PIRSF COBRA 7 453 IPR006918 GO:0010215|GO:0031225
Lja2g1521 453 PANTHER PROTEIN COBRA 9 451 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1521 Lja-Chr2 14923695 14927930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1521 19 448 COBRA Gene Family AT3G02210 75.231 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1521 - - gmx:100783820 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1521 2 14923695 14927930 Lja2g1521 2 14923695 14927930 ECH
Lja1g2738 1 32743924 32747431 Lja2g1521 2 14923695 14927930 ECH
Lja2g1521 2 14923695 14927930 Lja1g2739 1 32747442 32749777 PCT
Lja1g2738 1 32743924 32747431 Lja2g1521 2 14923695 14927930 PCT