Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1520 ATGAGGCTTGTTATCTCAGCTCTCTGTGTTCTTGTGCTATTCTCTTATGCAGTTGCATATGATCCATTGGATCCAAATGGCAACATAACAATCAAATGGGATGTGATGTCTTGGACACCAGATGGCTATGTGGCTGTGGTAACAGTCCACAATTTCCAAATGTTTCGGCACATCATGAATCCAGGGTGGACATTGGGATGGACATGGGCTAAGAAAGAAGTGATATGGACCATGGTAGGAGCTCAAACCACAGAGCAAGGAGACTGCTCAAAGTTCAAAGGCAACATACCTCACTGCTGCAAGAAAATTCCCACAGTTGTGGACTTGCTCCCTGGTGTGCCTTACAACCAACAATTCTCAAACTGCTGTAAGGGCGGAGTGGTTGCAGCATGGGGTCAAGATCCTTCACAATCTATCTCATCCTTCCAAGTCAGTGTAGGACAAGCTGGCACCTCAAACAAGACAGTGAAACTCCCCAAGAATTTCACGCTCTTGGCTCCAGGACCAGGCTATACTTGTGGCCCTGCAAAGGTTGTTCCTTCCACCAATTTCCTTACACCCGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACCTGCACATACTCACAATTTCTAGCAAGGAAAAACCCAAGTTGTTGTGTGTCTTTGTCATCCTTCTACAATGAAACCATTACCCCATGCCCCTCTTGTGCCTGTGGCTGCCAGAACAAAAAGAATTGTGTGAAGAGAGACTCTAAGATTCTCAGCATGGTGGGGGTTCATACTCCAAAGAAAGACAATGAACCATTACTGCAGTGCACTCATCATATGTGCCCAATCAGGGTCCACTGGCATGTGAAGGTCAACTATAAGGACTATTGGCGAGTGAAGATCGCCGTAACGAATTTCAATTACAGGTTGAATTACTCTTTGTGGACTCTTGCTGTTCAGCATCCAAATCTTAACAACATCACCCAAGTTTTCAGCTTTGATTACAAGCCTCTTCAACCCTATGAGAACATAAATGATACTGGCATGTTCTATGGCATGAAATACTTCAATGATCTTCTAATGGAAGCTGGACCAAAAGGGAATATCCAATCAGAGTTACTTCTTCAGAAGGACAAGAATACATTCTCATTCAAGCAGGGTTGGGCATTTCCTCGCAAAGTGTACTTTAATGGTGATGAATGCATGATGCCCCCACCTGACACCTACCCATTTCTGCCAAATTCTGCTCCTACAAGCCTAGTTTCCTTCCAGGCACTCATCTTCTCATTGCTCATAATGCTAGCAGTTTGGTGA 1296 0.4468 MRLVISALCVLVLFSYAVAYDPLDPNGNITIKWDVMSWTPDGYVAVVTVHNFQMFRHIMNPGWTLGWTWAKKEVIWTMVGAQTTEQGDCSKFKGNIPHCCKKIPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSQSISSFQVSVGQAGTSNKTVKLPKNFTLLAPGPGYTCGPAKVVPSTNFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCQNKKNCVKRDSKILSMVGVHTPKKDNEPLLQCTHHMCPIRVHWHVKVNYKDYWRVKIAVTNFNYRLNYSLWTLAVQHPNLNNITQVFSFDYKPLQPYENINDTGMFYGMKYFNDLLMEAGPKGNIQSELLLQKDKNTFSFKQGWAFPRKVYFNGDECMMPPPDTYPFLPNSAPTSLVSFQALIFSLLIMLAVW* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1520 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0031225
Lja2g1520 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Lja2g1520 431 PANTHER COBRA-LIKE PROTEIN 4 429 - -
Lja2g1520 431 PANTHER PROTEIN COBRA 4 429 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1520 Lja-Chr2 14913251 14916536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1520 1 430 COBRA Gene Family AT3G29810 64.786 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1520 - - gmx:100798678 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1520 2 14913251 14916536 Lja2g1520 2 14913251 14916536 ECH
Lja2g1520 2 14913251 14916536 Lja1g2738 1 32743924 32747431 PCT