Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1507 ATGGGTTCTGTTTGTTGTTGTCTGAGTTTTGACGATTTTGAAGATTATGTAAATCCAAATAGTCCTGTGTATAGGAACTGTGCTTGTCTCAGCTGCTTGATACAGAATGTTTTGAATGTGTATACATCAATATTCCGTAGAGGGGAAGTGCATTCACTACCTTCATCTATTCAGGGAACAGCATCTATGACTTCTGCTGCATCGCTTGATAATTCTCTCTCTGACCTGTACCGATCTCCTCCAAGGCCCTTACCTTATGATGCAGAACCTAGATATTTCCGCTCACAACGTGATGGTCTAGTTTCAAGGCGTGATAAGAGTTCAAGTCATTCAAATGAGGAAACAGAACCTCTGAGAAGTGATGTAGAGGTGGATCCAGAATCTTTTAATTCAGGAGACAAATGGAATGGATGTGCCGGTGATGATGGATCAAAGGAATGCCGTTCAAAGTCCGCACTAAAAATTTCATCAGCAAAATATACAACTGGAGTTGGGCTTATTTATGCATCATCAGAAGAGGAAGATGTCTGCCCAACTTGTCTTGAAGAATACACTACTGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTCCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGAAAGGTGATGCTATTTGATGAATCCACATTTTCTTGA 690 0.4029 MGSVCCCLSFDDFEDYVNPNSPVYRNCACLSCLIQNVLNVYTSIFRRGEVHSLPSSIQGTASMTSAASLDNSLSDLYRSPPRPLPYDAEPRYFRSQRDGLVSRRDKSSSHSNEETEPLRSDVEVDPESFNSGDKWNGCAGDDGSKECRSKSALKISSAKYTTGVGLIYASSEEEDVCPTCLEEYTTENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFDESTFS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1507 229 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Lja2g1507 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 224 IPR013083 -
Lja2g1507 229 SUPERFAMILY RING/U-box 172 224 - -
Lja2g1507 229 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Lja2g1507 229 SMART ring_2 177 217 IPR001841 -
Lja2g1507 229 MobiDBLite consensus disorder prediction 98 128 - -
Lja2g1507 229 MobiDBLite consensus disorder prediction 98 144 - -
Lja2g1507 229 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Lja2g1507 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1507 Lja-Chr2 14611025 14617999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1507 1 226 C3H Transcription Factor Family AT5G15790 59.740 1.60e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1507 - - gmx:100777068 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1507 2 14611025 14617999 Lja2g1507 2 14611025 14617999 ECH