Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1488 ATGTCTCGCTATTCTTCCAATCCCTTTCATTCCGATTCCGATTCCGACTCTGTCAATTGCTTCGTCACCGATCTCTTCGAATCCCACCGCTCCTCCTCCTCCTCCTCCTCCGACCACCCTCCTCCTCCTCGCCGTTGCTCCTGCCACGACATCAGCATAAACCCCTTCTCCGGTGCCATCTGCGACCTTCACCACCACCGCCCACAAGGCTTCCAGTTAGGGTTTGATTTTGACGACGAATTCGATCCCCAAAACCACGATCAGCTTTTCGATTTCTCCGTCGGTGCTGCTCATTCAACCGGCGGGCTTAGGGTTGTCGGCTTCGGTTCCGATTCTGATTCCAGCGGCGACGAGGGCGGGAACATTGGTGGTGACAGGGTTGAAGGTGGGTTTGATGAGTTTGATGTTCGATTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGAACCTCAATGAATGGGAGGAGGTGGTGGAGGAGAGTAGGCTGAATGAGAGAGAGCTAGGTTCCACCTTGGTGATTGATGAGGTTGGGGTTGGGGTTGGGGTTGAGGTTGAGGATCAATCAGTGGCGTCCGGGTTCGAAGAGGAAGATGAAGAGGAAGAGGCGTTTAGGCACCTGGAGTGGGAGATTCTGGTGGCGGTTAACAATTTGGAGATGGATGTTGCATTGCATCATGAAGTTGAGAATAGTTTTGATGAAGGCTATTTAACGGTTCATGAATATGATAGTTTTATACCGACCGCGTTTCAGGATGGTTTTATATCCACAGCTGATTACGAGGTTCTTTTCGGGCAGCTTCTGCAGAATGAGAGTGGCTTGAAAGGGAGCCCTCCCGCAGCCAAGAGTTTCGTGGAGAGTCTCCCCCTGGTCGAGCTCACGGAGGAGGAGTTGCGGGGGAAGGATATGGCGTGCGCCATTTGTAAGGATGAGATCATGTTGGAGGAGAAGGTGAGGAGGCTACCTTGCTCCCATTGTTACCATGGGGACTGCATTTTGCCGTGGTTGAGTATTCGCAACACCTGCCCGGTTTGTCGGTTCGAGTTGCCCACGGATGATCCTGATTATGAGCAGAGTAAGATCGAGGGTGCTGCCGCCCATGGTCTTATGGAGCTTGCAACAGAGATGCAGTTTTGA 1137 0.5224 MSRYSSNPFHSDSDSDSVNCFVTDLFESHRSSSSSSSDHPPPPRRCSCHDISINPFSGAICDLHHHRPQGFQLGFDFDDEFDPQNHDQLFDFSVGAAHSTGGLRVVGFGSDSDSSGDEGGNIGGDRVEGGFDEFDVRLCWDSLCLEDQRNLNEWEEVVEESRLNERELGSTLVIDEVGVGVGVEVEDQSVASGFEEEDEEEEAFRHLEWEILVAVNNLEMDVALHHEVENSFDEGYLTVHEYDSFIPTAFQDGFISTADYEVLFGQLLQNESGLKGSPPAAKSFVESLPLVELTEEELRGKDMACAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQSKIEGAAAHGLMELATEMQF* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1488 378 SUPERFAMILY RING/U-box 293 353 - -
Lja2g1488 378 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 378 - -
Lja2g1488 378 CDD RING-H2_RNF126_like 305 346 - -
Lja2g1488 378 Pfam Ring finger domain 304 346 IPR001841 -
Lja2g1488 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 352 IPR013083 -
Lja2g1488 378 ProSiteProfiles Zinc finger RING-type profile. 305 346 IPR001841 -
Lja2g1488 378 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 378 - -
Lja2g1488 378 SMART ring_2 305 345 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1488 Lja-Chr2 14416354 14418050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1488 252 360 C3H Transcription Factor Family AT5G15820 60.550 7.70e-44 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1488 - - gmx:100812037 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1488 2 14416354 14418050 Lja2g1488 2 14416354 14418050 ECH