Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1487 ATGCAGGCCAGAGAAGCACCAGGACTCAATTATATGCTCCCTTCAAACCCACCTCCTTATCCAGCTAACTACACCATGATTCAGAACAACATTCCCACATTCCAATTCCAAAGATTCTCTAACCAATTGTTTCAAGTACCAGATTTCAGTCCTCAATCCTCATGTATCAGCAGCAATTCCACTTCTGATGAAGCAGATGAGCAGCAACAAGGTCTGATCAATGAGAGGAAACACAGGAGGATGATATCAAACCGAGAATCAGCGCGGCGATCGCGCATGAGGAAGCAGAGGCACCTTGATGAGCTCTGGTCACAGGTGGTTTGGCTCAGGAATGAGAATCACCAGCTACTTGACAAGCTGAGCCATGCCTCAGAGAGCCATGATCAAGTGGTTCAAGAGAATGCTCAGCTGAAAGAGGAAGCTTTAGAGCTTCGCCAAATGCTAAGGGACATGCAGATACACAGTCCCTGCCCTTCCTTTGCCCCTCTTGAAGATGCCTATCTGAGATCTGATTCTCCAAACCAATCCATCTCAAGTTCCATGGACCTGCTTGGTTAA 558 0.4713 MQAREAPGLNYMLPSNPPPYPANYTMIQNNIPTFQFQRFSNQLFQVPDFSPQSSCISSNSTSDEADEQQQGLINERKHRRMISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLLDKLSHASESHDQVVQENAQLKEEALELRQMLRDMQIHSPCPSFAPLEDAYLRSDSPNQSISSSMDLLG* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1487 185 Coils Coil 120 154 - -
Lja2g1487 185 Pfam bZIP transcription factor 76 126 IPR004827 GO:0003700|GO:0006355
Lja2g1487 185 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 74 137 IPR004827 GO:0003700|GO:0006355
Lja2g1487 185 CDD bZIP_plant_GBF1 77 128 IPR045314 GO:0003700|GO:0006355
Lja2g1487 185 Gene3D - 74 130 - -
Lja2g1487 185 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 185 IPR044521 -
Lja2g1487 185 MobiDBLite consensus disorder prediction 50 73 - -
Lja2g1487 185 SUPERFAMILY Leucine zipper domain 76 125 IPR046347 GO:0003700|GO:0006355
Lja2g1487 185 MobiDBLite consensus disorder prediction 50 68 - -
Lja2g1487 185 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 79 94 IPR004827 GO:0003700|GO:0006355
Lja2g1487 185 PANTHER BZIP TRANSCRIPTION FACTOR 1 185 - -
Lja2g1487 185 SMART brlzneu 72 136 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1487 Lja-Chr2 14399377 14400451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1487 19 160 bZIP Transcription Factor Family AT3G30530 65.517 2.96e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja2g1487 bZIP_1 2.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1487 - - aprc:113867865 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1487 2 14399377 14400451 Lja2g1487 2 14399377 14400451 ECH
Lja2g1487 2 14399377 14400451 Lja1g2697 1 31946410 31947673 PCT