Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1479 ATGATTGGTCGCTATGAAGACTGGTTCAATATTGTGATGGCTAAAATGGACATGCTTGGCTTGAATGTCATTTCTTTTATGCAATTGTTGAATCAAAAGAACATTCAACTCATCTTCATCTGCTCTGAAGGATCAGTTAATGCTGCTACATGGAAATGGTTAGCTGAAGGCCCATGTTATTTACTAGAGGAGCCTATTCTTGAAAAAGATCTCAAATATTTGTGGCACAATATATATCAGACAAAATCTGGCTCAGGAACAAAAACTGATGACAACGAGGCCCATGAAGCAAATGGAGAAGAGAATGGTGATGCCAGTGGAAGCCTTGACAACAATGACCATATTGCTGAGGAGGGAGAGGCAAGAAAAGCTGATAGAAACGGATCTGCTGAGAAAAAACGTCATGCGCCTCTTTGGACTCCAGAGCTACATCAATTGTTTGAAAAAACTGTCTTGATGCTAGGAAATGAAGATGCTCAACCAAAAGATGTTCTGATTTATATGAATGTGCCTAGCATAACAAAAGACCAGGTGAAAAGTCATCTGCAGAAATACAAGGCCCAGCTAAAGCTTAAAAAGGCAGAGTCTTCTATATTTGAAGGCCCAAGTTACCAAGAGGGATTTGCTCCAAGTCATCCAGCACCAAATACTTCATTGAATATGAATAAGGAGCAAAACCAAAATCAGATGAGCTCTGCAAACGCAGCTCAAACTCAACAAGAGTCACATACTAGCAAACAGCTGGAAATTCAAGGAAACACATATAAATTTCCTTTGGTTTTCAATAGTCATAATCAATGGATTGCCGCTCAGACAGTCATACCTACAAGATTGGCAAACAATGATAGCCAAAGTCTAGATTCTACATTGGGAAAACTTGTGTCAGGGGCTTCAACAGTTGAAACCCAGCTAAAAACAATGTTCTCCCCCACACAGAGATACAAGTCCCAGCTAAAGCTTAAAAAGGCCCAAAGTTCTTATTTATCTTCAGGGAGTTCAAGACCATACTTCACTACCAAGAACAAGTATCAGGAGCAAAACAAAAATCATATGAGCTCTTCAAATCCTGCTCAAACTCAACAAGAGTCAAATACTAGAAAACAACTGGAAAATCAAGGAAAAACATCTAGGAACATGCCTTCTATGTTGGAAGGCCCAAGTTACCAAGGATTTGCTCCATGTCACCCTGCACCAACTACTTCATTGAACATGAATCAGGAGCGAAACCAAAATCAGATGAGCTCTGCAGATGCTGTTCAAACTCAACAAAAGTCAAATACTAGCAAACAACTGGAAATTCAAGGCAACCCATCCAAACCCATTCCTTATGTGTTTGAAGGCCCAAGTTACCAAGGAGGATTTGCTCCAAGTCACCATGCACCAACTACTTCATTGAACATGAATAAGCAGCAAAACCAAAATCATATGAGATACGCAGGTCCTGCTAAAACTCAACAAAAGTTAGATGCTAGCAAACAGCTGGAAATTCAATGTAACACATCTAAGAACATGTCTTCTATGTTTGGAGGACCAAGTTACCAAGGATTTTCTCCAAGTCACCCTGCGCCAACTACTTCATTGAACATGAATCAAGAGCGCAACCAAAATCAGATGAGCTTTGCAGATGCTGCTCAAACTCAACAAAAGTCAGATACTAGCAAACAGCTGGAAATTCCATCGAGAAACATGTCTTCTATGATTGAAGGCCCAAGTTACCAAGCGGGATTTGCTCCAAGTCACCCTACACCAATTTCTTCATTGAACATGAATCAGGAGCAAAACCAAAATCAGATGAGCTCTGCTGATGCTGCTCAAACTCAACAAGAGTCAGATACTAGAAAACAACTTGAAATTCAAGGAAACACATCCACAAACATGCCTTATATGTTTGGAGCCCCTAGTTACCAAGGGGGATTTACTCCAAGTCACCCTGCACCAATTACTTCATTGAACATGAATCAGGAGGAAAACCAAAATCAGATGAGTTCTGCAGATGCTACTCAAATTCAACAAGAGTCAGATACTAGCAAACAACTGGAAATTCAAGGCAACACCTCCATTGTTCATGAATTCCCAACGGGATTGGCCAACAATGAAAGCCAAAGTCTAGATTCTATACTGGGAAACCTTGTGCCAGAGGCTTCAACTGTTGAAACCCAACCTGAAGAAGATTTTGATAGTATTCTCCAAAAAATGCGCGAGGATAAATTTTTTGCAGATGAAATGAATATGGGCTATGATTATGAATTCAATGCGGCGTTAAGGATGATGCCATAA 2277 0.4014 MIGRYEDWFNIVMAKMDMLGLNVISFMQLLNQKNIQLIFICSEGSVNAATWKWLAEGPCYLLEEPILEKDLKYLWHNIYQTKSGSGTKTDDNEAHEANGEENGDASGSLDNNDHIAEEGEARKADRNGSAEKKRHAPLWTPELHQLFEKTVLMLGNEDAQPKDVLIYMNVPSITKDQVKSHLQKYKAQLKLKKAESSIFEGPSYQEGFAPSHPAPNTSLNMNKEQNQNQMSSANAAQTQQESHTSKQLEIQGNTYKFPLVFNSHNQWIAAQTVIPTRLANNDSQSLDSTLGKLVSGASTVETQLKTMFSPTQRYKSQLKLKKAQSSYLSSGSSRPYFTTKNKYQEQNKNHMSSSNPAQTQQESNTRKQLENQGKTSRNMPSMLEGPSYQGFAPCHPAPTTSLNMNQERNQNQMSSADAVQTQQKSNTSKQLEIQGNPSKPIPYVFEGPSYQGGFAPSHHAPTTSLNMNKQQNQNHMRYAGPAKTQQKLDASKQLEIQCNTSKNMSSMFGGPSYQGFSPSHPAPTTSLNMNQERNQNQMSFADAAQTQQKSDTSKQLEIPSRNMSSMIEGPSYQAGFAPSHPTPISSLNMNQEQNQNQMSSADAAQTQQESDTRKQLEIQGNTSTNMPYMFGAPSYQGGFTPSHPAPITSLNMNQEENQNQMSSADATQIQQESDTSKQLEIQGNTSIVHEFPTGLANNESQSLDSILGNLVPEASTVETQPEEDFDSILQKMREDKFFADEMNMGYDYEFNAALRMMP* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1479 758 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 412 IPR045279 GO:0009736
Lja2g1479 758 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 190 IPR017930 -
Lja2g1479 758 MobiDBLite consensus disorder prediction 84 112 - -
Lja2g1479 758 MobiDBLite consensus disorder prediction 502 614 - -
Lja2g1479 758 MobiDBLite consensus disorder prediction 210 246 - -
Lja2g1479 758 MobiDBLite consensus disorder prediction 207 246 - -
Lja2g1479 758 Coils Coil 589 609 - -
Lja2g1479 758 MobiDBLite consensus disorder prediction 344 440 - -
Lja2g1479 758 Coils Coil 175 195 - -
Lja2g1479 758 Coils Coil 652 672 - -
Lja2g1479 758 MobiDBLite consensus disorder prediction 394 435 - -
Lja2g1479 758 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 139 186 IPR006447 GO:0003677
Lja2g1479 758 Gene3D - 130 192 - -
Lja2g1479 758 MobiDBLite consensus disorder prediction 578 614 - -
Lja2g1479 758 SUPERFAMILY Homeodomain-like 133 189 IPR009057 -
Lja2g1479 758 MobiDBLite consensus disorder prediction 344 383 - -
Lja2g1479 758 MobiDBLite consensus disorder prediction 502 569 - -
Lja2g1479 758 Coils Coil 221 241 - -
Lja2g1479 758 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11-LIKE 5 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1479 Lja-Chr2 14283778 14289290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1479 9 190 Response Regulator Gene Family AT2G25180 26.667 3.47e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja2g1479 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1479 - - lja:Lj0g3v0326389.1 315.079