Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1456 ATGTCATCTTATTTTTCATCATTTCTTATCCCCTGCCACCTCTTCTTCACTATCTTCCTTCTGTTGAAAGTTACTTTCTCTTATGTGGATCCAACTTTCCAAGCTTGTGAACCAAAGTCCTGTGGTAATGGCCAAAACATCAGCTACCCCTTCTACATCATAGAGAAGCAACAACCCTTTTGTGGGAATCCAGGTTTTGAGCTCACTTGTGGCAAGAATGGTTTCCCAATTTTCAACCTTATCAACATCCAATATACCGTCCAAGAAATCTTCTACAACAACCAAACACTCCGACTGTCCAACCCTGCGTTTTCAGAGTCAAACGCCTCAGCATGTGTTGCTCCAACCCAGAACCTCACAGTTGGGAAATACAGGTTTCAAATTGTTCCCAACCAAAGGGATATGTTGTTGTTCTACGGCTGCAACTCAACATCGCTACCTGATTGGCTGAAAAAACAAGAGATAGGGTGTTCTGCAGAAAACAGAACAAGTTCAGTGGTGGGTTTATATAATAGGGAGGATCAGAATTTGAGGTTACTGAGGGAGAAGTGCAAGGGTGGAGTGGTGAATGCAATAGTGGAAGATGAGAAAGTAGGGGTAAAAGAGGCACTGAGAAAAGGGTTTGTGTTGAAATGGAATGCATCTAACTGCAGCGAGTGCAAGAACACTGGAGGAAGGTGCGGGTTCGATTTGGACCCTCAAACATACGCTTTCAGGTGCTGCTGTCCTGATGGAAATTTTCCACTTTCAGTCTTTTTACAACCTTCAAATAGAATGGAAAAATCCTTGCCATTATTGTGTAGGGAAGGATCTAGAGCTCATCAAGAGTTTGAGACTTTTCTCAAAAACCATGGACCACTTGCTGTAAAAAGATATAGCTACTCTGACATAAAGAAGATGACCAATTCCTTTGCAGAAAAATTAGGACACGGAGGATATGGATCTGTTTACAAGGGGAGGATACATCATGAATGTCCAGTTGCCGTGAAGGTGTTGAATAGCTCAAAAGGTAATGGAGAGGAGTTCATAAACGAGGTAGCAAGCATTAGCAGAACATCTCATGTTAACATAGTTACTCTATTAGGATTTTGTTTTGAAGGATCTAAGAGAGCATTGGTATATGAGTTCATGTTCAATGGATCATTGGAGAAATTCATATATGGAAAAAATCCAATGGCAGTAGAAAACCAATTGAATTGCGAAACCTTATACCAAATTGCAATCGGTGTGGCTCGAGGATTGGAATATTTACACAAAGGATGTAACACTCGAATCTTACATTTTGACATCAAACCTCACAATATATTGCTTGATGGGGACTTCTGTCCAAAGATTGCAGATTTTGGACTTGCAAAAATTTGCCCAAGAAAGGAGAGTATTGTGTCCATGTTAGGTGCAAGAGGAACTGCAGGGTATATTGCTCCTGAGGTGTTTTCTAGAAATTTCGGTGGTATATCTCATAAGTCAGATGCCTATAGTTTTGGAATGATGGTTCTTGAAATGGTTGGAGGAAAAATGAATATTAATGTGGAAGTTGAGTGTTCTAGTGAAATATATTTTCCACATTGGATTTACAAGTCTCTAGAAAAGAATCAAGAACTTGCTTTACGGTGTATCAAAAATGAAAATGATAATGAGAAGGCGAGGAAGATGATTTTGGTAAGTTTGTGGTGCATACAAACAAACCCTACTGCTCGTCCAGCAATAAGCCAAGTGGTAGATATGCTAGAAGGAAGCCTTGAATCGTTGCAAATACCACCCAAGCCTTTCTTATCTTCACCAATAGCATCACCAACCCATTACTCCAATTTTTTTACCACTCTACGTTTGAATCTCTCAAGACTCAATTGTAGTATAGTAAAGGGTTTTGTCGTATCCACAGGGAGGTGTAATACGTATGCCGTTCAATAG 1911 0.4003 MSSYFSSFLIPCHLFFTIFLLLKVTFSYVDPTFQACEPKSCGNGQNISYPFYIIEKQQPFCGNPGFELTCGKNGFPIFNLINIQYTVQEIFYNNQTLRLSNPAFSESNASACVAPTQNLTVGKYRFQIVPNQRDMLLFYGCNSTSLPDWLKKQEIGCSAENRTSSVVGLYNREDQNLRLLREKCKGGVVNAIVEDEKVGVKEALRKGFVLKWNASNCSECKNTGGRCGFDLDPQTYAFRCCCPDGNFPLSVFLQPSNRMEKSLPLLCREGSRAHQEFETFLKNHGPLAVKRYSYSDIKKMTNSFAEKLGHGGYGSVYKGRIHHECPVAVKVLNSSKGNGEEFINEVASISRTSHVNIVTLLGFCFEGSKRALVYEFMFNGSLEKFIYGKNPMAVENQLNCETLYQIAIGVARGLEYLHKGCNTRILHFDIKPHNILLDGDFCPKIADFGLAKICPRKESIVSMLGARGTAGYIAPEVFSRNFGGISHKSDAYSFGMMVLEMVGGKMNINVEVECSSEIYFPHWIYKSLEKNQELALRCIKNENDNEKARKMILVSLWCIQTNPTARPAISQVVDMLEGSLESLQIPPKPFLSSPIASPTHYSNFFTTLRLNLSRLNCSIVKGFVVSTGRCNTYAVQ* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1456 636 Pfam Wall-associated receptor kinase C-terminal 168 245 IPR032872 -
Lja2g1456 636 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 244 IPR045874 GO:0004672
Lja2g1456 636 PANTHER - 24 244 - -
Lja2g1456 636 PANTHER - 267 599 - -
Lja2g1456 636 PANTHER RUST RESISTANCE KINASE LR10-RELATED 267 599 IPR045874 GO:0004672
Lja2g1456 636 SUPERFAMILY Protein kinase-like (PK-like) 285 577 IPR011009 -
Lja2g1456 636 Pfam Wall-associated receptor kinase galacturonan-binding 36 100 IPR025287 GO:0030247
Lja2g1456 636 ProSiteProfiles Protein kinase domain profile. 302 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1456 636 Pfam Protein kinase domain 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1456 636 SMART serkin_6 302 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1456 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Lja2g1456 636 Gene3D Phosphorylase Kinase; domain 1 277 376 - -
Lja2g1456 636 Gene3D Transferase(Phosphotransferase) domain 1 377 585 - -
Lja2g1456 636 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1456 Lja-Chr2 14041154 14044501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1456 14 589 Receptor kinase-like Gene Family AT5G38260 40.354 6.67e-132 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja2g1456 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1456 - - lang:109359375 739.954