Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1437 ATGAGGAGACCAGAAGAGAACCCGTTAGATCTCAACAATTTTCCTGACGAGAATGCTAGAGATAATGGTAAACAAGTCATCCAAGATAGTTCCTCTTCTGGCAGTAAAAAGAAAAGTGGAAAGAAGGATGCAAAAGATGAGGAGTGTGGGAAGGTGTATGAGTGTAGATTTTGTTCCCTGAAGTTCTGCAAGTCTCAAGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACTGAGACGCTGAACCATGCTCGTCAGCTGGTCTTCCGCAATGATCGAACCACTCAAGTTGCCCCCCACCTAGGATGCTGTCCACCAATAGCAGCATCAGCAGGGAGCTATCATCCAGCTAGTAACATGGGAGATCCAACAATGCGTCTGAAATTCCCAAGATTCGTTTCTGGTTCATCCTCAACCCACATGGTACCAGTAGTACCACCACCACTTCCACAACCACCTCAACAATTCTTATCAAGGCCTCTCTCTTTTCCCTCACACCACTCCTCAGTGAATGATTACTATGTGGGACATGTCCTTAGTGGAAGCCACCCTCACAACTTTAACAACTATGCAGCAGCAGAATCTAATTACACTTGCATTGGAGCACCAGTAGGAGCAGCATTTGGTAAGGACATGCCACTGCACAATCAGCGTTTGGATCCTCCTTCAGTGATCAATCCATTTCAAGATCATGGCTTCTAA 711 0.4669 MRRPEENPLDLNNFPDENARDNGKQVIQDSSSSGSKKKSGKKDAKDEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDRTTQVAPHLGCCPPIAASAGSYHPASNMGDPTMRLKFPRFVSGSSSTHMVPVVPPPLPQPPQQFLSRPLSFPSHHSSVNDYYVGHVLSGSHPHNFNNYAAAESNYTCIGAPVGAAFGKDMPLHNQRLDPPSVINPFQDHGF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1437 236 PANTHER ZINC FINGER PROTEIN JAGGED 1 214 IPR031113 GO:0007275
Lja2g1437 236 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Lja2g1437 236 Gene3D Classic Zinc Finger 26 102 - -
Lja2g1437 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Lja2g1437 236 PANTHER ZINC FINGER PROTEIN JAGGED 1 214 IPR045320 GO:0003700
Lja2g1437 236 MobiDBLite consensus disorder prediction 1 44 - -
Lja2g1437 236 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1437 Lja-Chr2 13808083 13811351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1437 1 218 C2H2 Transcription Factor Family AT1G13400 43.612 2.75e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g1437 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1437 - - lja:Lj2g3v1154150.1 329.331