Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1355 ATGATTCTCAAGTGTTTGGGTTTTCGCCGTTCAAAGAAGAACTCAAGTTCAACTAAGAGGCCCTACCCAACAGTGATAGAAGAGTTATCCCATCCATTTTCTCTGGAAGATATTAGGAAATCAACCAATAACTTTGATGAAGTAATTGGTGTAGGAGGCTATGGTAAAGTATATCAAGGCAAAGCTCGTCTTCTCCAACTTGATCATGTTGCTACTACTACTGCACTTGTAGCGGTGAAGCGAATAAATGTATCTTATAATACATATGCATTGAGAGAGTTCCAAAAAGAAGTTGAGTTGCTCTGCCAGTTTCGTCACCCTAATTTGGTCTCTCTTATTGGATTCTGCATCCACAAAGATGAAAGATTTATTGTTTACCCGTACATGTCCAATGGTTCCCTTGCTGATTGTTTATTCAAGAGGGATCAAAGGGAACCACTCTCATGGAAGAAGAGGCTAGAGATATGCATTGGAGTGGCGCGTGCGGTGCACTACCTTCACACTGGACTCAAACGCATCATCATTCACCGTGACATCAAACCCTCTAACATTCTCTTGGATGAGAATATGGTACCCAAGCTCTATGATTTCGGGATTTCCTTACAAGGATCGTTGTTCTCGGCAAAGCCACAACCAATTGAAGGAAAACGCGTTGTTGGTACACTTGGTTACATGGCCCCCGAGAATATCAGGGATGGCATCTTGACAGATAAATGTGATGTTTATTCATTTGGCATTGTTCTATTAGAAGTGATATGTGCAAATCCAATTTATACAATTTTAGAGGAGATGCATGAGACAAATGAAGAAATATTGATCAGGCTCCAAGCTGAGGATATTGATCCGGCTCTTGCTGGAAATATTGCACCAGTGTGTTATGAAGTATACATAGATATCATTCGCAGGTGCTTAAAGCTTGAAGCAAATGAGCGACCAACAATGGGCGAAGTGGAGATGCTACTTGAGCATGCTCTGACTTTACAACAGGAAGCCGAAGCCACAGATACTAGTGATGATTATCTCTGA 1026 0.4133 MILKCLGFRRSKKNSSSTKRPYPTVIEELSHPFSLEDIRKSTNNFDEVIGVGGYGKVYQGKARLLQLDHVATTTALVAVKRINVSYNTYALREFQKEVELLCQFRHPNLVSLIGFCIHKDERFIVYPYMSNGSLADCLFKRDQREPLSWKKRLEICIGVARAVHYLHTGLKRIIIHRDIKPSNILLDENMVPKLYDFGISLQGSLFSAKPQPIEGKRVVGTLGYMAPENIRDGILTDKCDVYSFGIVLLEVICANPIYTILEEMHETNEEILIRLQAEDIDPALAGNIAPVCYEVYIDIIRRCLKLEANERPTMGEVEMLLEHALTLQQEAEATDTSDDYL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1355 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Lja2g1355 341 SUPERFAMILY Protein kinase-like (PK-like) 16 318 IPR011009 -
Lja2g1355 341 Gene3D Transferase(Phosphotransferase) domain 1 129 340 - -
Lja2g1355 341 Gene3D Phosphorylase Kinase; domain 1 7 128 - -
Lja2g1355 341 PANTHER TYROSINE KINASE FAMILY PROTEIN 16 340 - -
Lja2g1355 341 PANTHER OS07G0166700 PROTEIN 16 340 IPR045272 GO:0004714|GO:0006468
Lja2g1355 341 Pfam Protein tyrosine and serine/threonine kinase 45 318 IPR001245 GO:0004672|GO:0006468
Lja2g1355 341 ProSiteProfiles Protein kinase domain profile. 43 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1355 341 PIRSF TyrPK_CSF1-R 39 146 - -
Lja2g1355 341 PIRSF TyrPK_CSF1-R 135 340 - -
Lja2g1355 341 ProSitePatterns Protein kinases ATP-binding region signature. 49 80 IPR017441 GO:0005524
Lja2g1355 341 SMART serkin_6 43 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1355 Lja-Chr2 12953689 12955680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1355 16 332 Receptor kinase-like Gene Family AT5G39000 43.161 2.81e-76 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lja2g1355 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1355 - - lja:Lj2g3v1192990.3 604.749