Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1351 ATGGAGAAAGATCACAACTATTCGGCACCACCCATGCCTCCAAGTTTCAACCCACTTCATGACTACTCATCTCATCAACATCATCATAACAATCTGTATCCACAAATGAAGTTTCGAATCGGCGAAACTTCAGGTGAAAACAACAGCAACAACAGTGGGATGGTCATGGACTACATGCCACAAACACAACCACCGCCACAAATAACATCATCCCCAGGAGGGTTTTATGGAGGAGCTGGTGGTTTCGACAAGCTGAGTTTCGCTGATGTGGTGCAGTTTGCAGATTTTGGACCCAAATTGGCCTTGAACCACCAAGGCAAGGATAACTGCGAAGAATCCGGTATCGACCCGGTTTATTTTCTCAAGTTCCCTGTCTTGAACGACAAGATGGAGGACCAAAACTTGATGGTGAATCCAAATGGTGAAGGAGAAGAAGCTGAAAATGATGATGAGAGGTTCAATAACTTGGTGAGCGTGGACGACACGTCGAGGGCAGAAGAAGAGGGAATCATCATCAGAGAAGATGAAGAAGAAACCACTCCTGATGACAACAACTCGGTGCAGCAGCATCAGCATCAGAATCAGTTTGTTGGTCATGAAGATCAGCAGGTTCAGAAGAGTAATGTGCAGGAAAACAAGAACAAGAGGAAGAGACCGAGAAGCGTTAAGACAACTGAGGAAGTTGAGAGCCAGCGCATGACCCACATCGCTGTTGAGAGGAACCGGAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATAGGGGGAGCTATAGAGTTTGTGAGGGAATTGGAACAACTTCTTCAATGTTTGGAATCACAGAAGAGGAGGAGACTTCTCGGAGAAGCACAATCAAGACAGGTAGAAAATTCAGCTGCTCTGGCAGCTGCACCAGCAACACAGCAACAGCCTCCATTCTTTTCTCCACCTTTGCCAGTAAATGACCAGATGAAGCAGCTTGTGGAGATGGAGAGTGGTGGAGGACTTCGAGAAGAAACCGCAGAGAGCAAGTCTCTTTTGGCAGATGTAGAAGTGAAGCTTCTCGGATTCGACGCGATGATCAAAATCTTATCAAGAAGAAGGCCTGGACAGTTGATCAAGATCATTGCTGCACTTGAAGATCTTCAGCTCATTATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCTTTCAATGTCAAGGTGGCTGGTGATTCAAGGTTCACTGCTGAAGACATAGCCAGCTCCGTTCAGCAAATAGTGAGTTTTATCCATGCAAACATAAGCATGTGA 1335 0.4569 MEKDHNYSAPPMPPSFNPLHDYSSHQHHHNNLYPQMKFRIGETSGENNSNNSGMVMDYMPQTQPPPQITSSPGGFYGGAGGFDKLSFADVVQFADFGPKLALNHQGKDNCEESGIDPVYFLKFPVLNDKMEDQNLMVNPNGEGEEAENDDERFNNLVSVDDTSRAEEEGIIIREDEEETTPDDNNSVQQHQHQNQFVGHEDQQVQKSNVQENKNKRKRPRSVKTTEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQVENSAALAAAPATQQQPPFFSPPLPVNDQMKQLVEMESGGGLREETAESKSLLADVEVKLLGFDAMIKILSRRRPGQLIKIIAALEDLQLIILHTNITTIEQTVLYSFNVKVAGDSRFTAEDIASSVQQIVSFIHANISM* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1351 444 MobiDBLite consensus disorder prediction 41 70 - -
Lja2g1351 444 PANTHER TRANSCRIPTION FACTOR FAMA 28 444 IPR044283 GO:0003700|GO:0010052
Lja2g1351 444 MobiDBLite consensus disorder prediction 184 209 - -
Lja2g1351 444 CDD ACT_UUR-ACR-like 370 434 - -
Lja2g1351 444 PANTHER TRANSCRIPTION FACTOR FAMA 28 444 - -
Lja2g1351 444 MobiDBLite consensus disorder prediction 150 170 - -
Lja2g1351 444 MobiDBLite consensus disorder prediction 134 233 - -
Lja2g1351 444 MobiDBLite consensus disorder prediction 1 28 - -
Lja2g1351 444 Pfam Helix-loop-helix DNA-binding domain 231 282 IPR011598 GO:0046983
Lja2g1351 444 Gene3D - 221 296 IPR036638 GO:0046983
Lja2g1351 444 MobiDBLite consensus disorder prediction 210 233 - -
Lja2g1351 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 281 IPR011598 GO:0046983
Lja2g1351 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 297 IPR036638 GO:0046983
Lja2g1351 444 CDD bHLH_AtFAMA_like 233 300 - -
Lja2g1351 444 MobiDBLite consensus disorder prediction 41 72 - -
Lja2g1351 444 SMART finulus 236 287 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1351 Lja-Chr2 12928385 12931477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1351 40 444 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.048 1.50e-149 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g1351 HLH 9.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1351 - - gmx:100813515 516.538