Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1334 ATGAAGGTAGTCGCCGCTTACTTGCTCGCTGTTTTGGGTGGCAATTCTTCCCCCTCCGCCGATGATCTCAAAAACATCCTTGGCTCAGTTGGAATTGAGATTGAAGATGAGTTGATTGAGTTGCTCTTGAAAGAAGTCAAGGGCAAGGACTTCGCCGAGCTGATTGCCAGTGGTAGAGAAAAGTTGTCTGCTGTGCCTTCCGGTGGTATTGCTGTTTCTGTTGCTGCTGTATCTGGAGGAGGTGCTGCAGCTGGTGGCGCGGCTCCTGCTGCTGAAGCAAAGGAGGAAAAGAAGGAAGTAGAGAAGGAAGAGTCTGATGATGATATGGGTTTCAGTTTATTCGACTAA 348 0.4885 MKVVAAYLLAVLGGNSSPSADDLKNILGSVGIEIEDELIELLLKEVKGKDFAELIASGREKLSAVPSGGIAVSVAAVSGGGAAAGGAAPAAEAKEEKKEVEKEESDDDMGFSLFD* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1334 115 Pfam 60s Acidic ribosomal protein 17 114 - -
Lja2g1334 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lja2g1334 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lja2g1334 115 MobiDBLite consensus disorder prediction 91 109 - -
Lja2g1334 115 Gene3D - 1 59 IPR038716 -
Lja2g1334 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 115 - -
Lja2g1334 115 MobiDBLite consensus disorder prediction 80 115 - -
Lja2g1334 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1334 Lja-Chr2 12764092 12765220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1334 1 115 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 64.348 8.50e-32 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1334 K02943 - han:110890945 114.39