Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1332 ATGGCTAAAGATGCTTCTGGTTCTGATTCCCATCACACGCGTTTAGGTCTTTTGAAAGATCAAGTTCATTTGGTTAAAAGGAAAGACTCTGATCGCTATGAGATTGCTCCAATCCAGGATCAACTTTCATTTGAGAAGGGATTTTTTATAGTAATTCGTGCATGCCAATTGTTATCCCAAAAGAATGATGGAATAATATTGGTAGGGGTGGCTGGTCCTTCAGGAGCGGGGAAGACTATTTTTACTGAAAAGATACTCAACTTCATGCCCAGCATCGCTGTCATTTCAATGGACAATTACAATGATGCTAGTCGAATTATTGATGGAAACTTCGATGATCCACGCTTAACAGACTATGACACATTGCTCCAGAATTTACATGATATAAAGGAAGGAAAGCCAACGCAGGTCCCGATATATGATTTCAAGTCCAGTTCACGTATAGGATACAGGACAGTAGAAGCCCCAAGTTCCCGTATTGTAATTATAGAGGGGATCTACGCTTTGAGTGAGAAGTTGCGAACTCTACTGGACCTTCGAGTTTCTGTTACAGGTGGAGTTCACCTTGACCTTGTAAAACGAGTTATACGTGACATACAACGTGCTAGCCAAGAACCTCAAGAAATTATTCATCAAATATCAGAAACGGTTTATCCAATGTACAAGGCTTTTATTGAGCCAGATCTCCAGACAGCACACATAAAAATCATAAACAAATTCAATCCGTTTACTGGATTCCAAAGCCCTACTTACATATTAAAGTCAGGAAGGAATGTAACAGCGGATCAAGTAAAAGAAGCTCTCACTGAAGATTTTAAGGAAACAACGGAGCAAACTTATGACATATATCTTCTTCCGCCTGGTGAAGATCCAGAAGCTTGTCAATCATATTTACGGATGCGAAATAAAGATGGAAAATACAGTCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTTGTCATATCACCAAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGTGGTCTAATGGCCTTGGGATACACGATAGCAACAATCCTCAAGCGAAACAGTCATGTCTTTTCTGATGATAAGGTTTGTGTGAAGCTAGATTGGCTTGAGCAACTTAATCGGCATTATGTTCAGGTACAGGGAAGAGATCGCTTATCTGTACAAAACGTAGGACAGCTGCTAGGTCTTGAAGGTTCCTACATTCCTCGGACCTACATTGAGCAAATTCAACTTGAAAAGCTTGTGAATGAGGTTATGGCCCTACCAGATGATTTGAAAACAAAACTCAGCCTAGATGAGGAGTTGGTGTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCTGATAGGGTTGCCATGAGGAACAAAAATCTGAGGAGTGGAATGTCACAGTCATATACGAATCAAAGGGACAGAAATTTAGCCAAAGTTACTGGATATGGTACCAACAATCGAGGGTTTGGTGAAAGAAATTCAGATTCCTCCACAGCACAGGGAGCCATTAGTCAGCTTTCGGATCAGATTTCTGCCCTCAATGATAGAATGGATGAATTTACAAGTCGTGTTGAAGAGCTGAACTCCAAGTTAACAATCAAAAGTTCTCCGAGCCAACAAAATTTGTCCGTTCAAGCTGAGACATGCAATGGTTCAGCTCCCACATCTTACTTCATCACTAGTTTAGGCAACGGTTCCCTAACAGGATCGAAGATACCAAATTCTTCATCTTCATCACAATTAGCTAAAGAATCTCCGTTAATGGATGAGATATCAGGTATTGCTCGTAGCCAGCGTCAGATGATGCACCAAATGGACAATCTCAATAATCTTCTGCGGGGGAACTTGGGGGAGACGTCACACCAAACAAGAACTAACCGGAAAAGCAAAGCTACAGATTCAAATTTCACCGGAACTCATGTTACGGTGGTGGTGGCAGCGGTTGGTTGTTTGGGGATCTTCTTGATGAGAGGTTTGTTGACAAGAAAGTGA 1983 0.4155 MAKDASGSDSHHTRLGLLKDQVHLVKRKDSDRYEIAPIQDQLSFEKGFFIVIRACQLLSQKNDGIILVGVAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDASRIIDGNFDDPRLTDYDTLLQNLHDIKEGKPTQVPIYDFKSSSRIGYRTVEAPSSRIVIIEGIYALSEKLRTLLDLRVSVTGGVHLDLVKRVIRDIQRASQEPQEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQSPTYILKSGRNVTADQVKEALTEDFKETTEQTYDIYLLPPGEDPEACQSYLRMRNKDGKYSLMFEEWVTDSPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDKVCVKLDWLEQLNRHYVQVQGRDRLSVQNVGQLLGLEGSYIPRTYIEQIQLEKLVNEVMALPDDLKTKLSLDEELVSSPKEALSRASADRVAMRNKNLRSGMSQSYTNQRDRNLAKVTGYGTNNRGFGERNSDSSTAQGAISQLSDQISALNDRMDEFTSRVEELNSKLTIKSSPSQQNLSVQAETCNGSAPTSYFITSLGNGSLTGSKIPNSSSSSQLAKESPLMDEISGIARSQRQMMHQMDNLNNLLRGNLGETSHQTRTNRKSKATDSNFTGTHVTVVVAAVGCLGIFLMRGLLTRK* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1332 660 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Lja2g1332 660 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Lja2g1332 660 Coils Coil 500 527 - -
Lja2g1332 660 Gene3D - 66 246 IPR027417 -
Lja2g1332 660 PRINTS Uridine kinase signature 132 147 - -
Lja2g1332 660 PRINTS Uridine kinase signature 224 237 - -
Lja2g1332 660 PRINTS Uridine kinase signature 188 198 - -
Lja2g1332 660 PRINTS Uridine kinase signature 65 82 - -
Lja2g1332 660 CDD UMPK_like 67 239 - -
Lja2g1332 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 236 IPR027417 -
Lja2g1332 660 PANTHER URIDINE KINASE 5 648 - -
Lja2g1332 660 Pfam CYTH domain 269 404 IPR023577 -
Lja2g1332 660 Gene3D - 257 412 - -
Lja2g1332 660 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 5 648 - -
Lja2g1332 660 MobiDBLite consensus disorder prediction 476 500 - -
Lja2g1332 660 SUPERFAMILY CYTH-like phosphatases 263 407 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1332 Lja-Chr2 12748847 12758092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1332 66 236 PRT Gene Family AT5G40870 26.111 1.43e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1332 K00876 - gmx:100781286 1127.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1332 2 12748847 12758092 Lja2g1332 2 12748847 12758092 ECH