Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1317 ATGAGTGACAAAGAAAAGTTTGAGCTAGATAGAAACGAGGATCCTATGAGTTATTCTACTGGTGTGCCCTCAGATTGGAGATTTGAGGGTGCCAATCTTGCAAATTCATCTGTTGGTTTTGTCAGCAGAGGGGATTTGATTGGTTCTTCTTCTTGTTCCTCTGCCTCAATGGTGGACTCATTTGCTCCAAACTTTTGGGAGCATCATCCCACCAATTCCCACAACTTGGGATTCTGTGACATCAATGTCCACAACAATAGTGGAAGCTCTTCAAACATGTCTGGAATCAGAAAAGATGGGTTTGAAATGGGTTGGAACCAGGGTAACACTTTGTTGAAAGGGGATGGTTTTTTACCAAATGGACTATTTCCTCAAACTTTGTCTCAGTTTCCATCTGATTCTGGGTTTATTGAGAGGGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTGGTCCTATGGCAAACTCATATGAGATTCCCCACCCCACGGGCCTGTATGCGGGCCATGGATTGCAATCAGCAGCTGGAGGACAATCTCAAGAGTGTGAACTAAATGTACTTGAAGCTTCAAAAGCTGTGTCTCCATCTGTTGAGCATTTAGCTACTAAAGGAAGCCCTTACAAGAATGATCAAAGAAGTGAAAGTCATGGTGTGTCTCAAGATGAAGGGAAGCAGCCTCTTGGTAGGCCTGCTAATGATTCTGACAGAGCTGAATCTAGTGACGATGATGGTGGCAGTGGCGGCGGCCAGGATGATTCCCCAATGTTGGAGGGTACTAGTGAGGAGCCTTCTGGTAAAGGACTAAACTCAAAGAAAAGGAAAAGAATTGGGCAGGATGCTGATAATGATAAAGCCAATGGAGCTTCAGAACTTCACAGTGAAGGCGCGAAGGATAACTCCGAGAGTCAACAGAAGGCAGATAAACAAACAACCTCAGCAGCCAAGGCTTCAGGGAAGAATGCCAAACATGGTTCTCAAGCTTCTGATCCAGCCAAGGAGGAATACATACACGTTCGGGCTCGCCGGGGTCAAGCAACAAATAGTCACAGCCTTGCAGAGAGAGTGAGGAGGGAAAAGATAAGTGAGAGGATGAAGTTCCTTCAAGATCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCTGTGATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAAAGACAGGTTGAGTTTTTGTCCATGAAACTTGCAACAGTAAATCCCCGACTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCACCAACGGCCTGGTCCTTCGTCAGGACTAGGTTTTCCCCTAGAAATGTCTATGGCTTTTCCTTCATTACATCCATCTCAACCAGGGCTGGTTCAGTCAATTATTCCTAACATGGGGAACTCATCTGATATCCTTCGGAGAGCCATTCATCCACAGTTAGCAGCACCGTTGAGTGGAGGATTCAAGGAGCCAAATCAGCTGCCTAATGTGTGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCAACCACTGCTCCCATGAGTAGCCAAGATGTGGATGGTAGTGTTGAAGCAAGCCAGATGAAAGTTGAACCTTAA 1602 0.4519 MSDKEKFELDRNEDPMSYSTGVPSDWRFEGANLANSSVGFVSRGDLIGSSSCSSASMVDSFAPNFWEHHPTNSHNLGFCDINVHNNSGSSSNMSGIRKDGFEMGWNQGNTLLKGDGFLPNGLFPQTLSQFPSDSGFIERAARFSCFSGGNFGPMANSYEIPHPTGLYAGHGLQSAAGGQSQECELNVLEASKAVSPSVEHLATKGSPYKNDQRSESHGVSQDEGKQPLGRPANDSDRAESSDDDGGSGGGQDDSPMLEGTSEEPSGKGLNSKKRKRIGQDADNDKANGASELHSEGAKDNSESQQKADKQTTSAAKASGKNAKHGSQASDPAKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILHQRPGPSSGLGFPLEMSMAFPSLHPSQPGLVQSIIPNMGNSSDILRRAIHPQLAAPLSGGFKEPNQLPNVWEDELHNVVQMSFATTAPMSSQDVDGSVEASQMKVEP* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1317 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 414 IPR036638 GO:0046983
Lja2g1317 533 MobiDBLite consensus disorder prediction 306 325 - -
Lja2g1317 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 395 IPR011598 GO:0046983
Lja2g1317 533 MobiDBLite consensus disorder prediction 514 533 - -
Lja2g1317 533 Gene3D - 342 415 IPR036638 GO:0046983
Lja2g1317 533 MobiDBLite consensus disorder prediction 267 305 - -
Lja2g1317 533 CDD bHLH_AtBPE_like 335 420 - -
Lja2g1317 533 MobiDBLite consensus disorder prediction 194 332 - -
Lja2g1317 533 SMART finulus 351 401 IPR011598 GO:0046983
Lja2g1317 533 Pfam Helix-loop-helix DNA-binding domain 348 396 IPR011598 GO:0046983
Lja2g1317 533 PANTHER BHLH TRANSCRIPTION FACTOR 37 532 - -
Lja2g1317 533 MobiDBLite consensus disorder prediction 229 243 - -
Lja2g1317 533 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 532 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1317 Lja-Chr2 12584948 12589325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1317 1 533 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 44.973 7.24e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g1317 HLH 6.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1317 - - gmx:100797720 768.844