Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1299 ATGGGAAGATCTCCATGCTGTGATGAAAGTGGTTTGAAGAAAGGTCCTTGGACACCAGAAGAAGATCACAAGCTTGTTAACTACATTCAAAAACATGGACATGCTAGCTGGAGAGCACTTCCAAAACTTGCAGGACTCAACAGGTGTGGCAAAAGCTGCAGGTTAAGGTGGACAAACTACTTGAGGCCTGACATTAAAAGAGGCAAGTTTTCCCAAGAAGAAGAACAAACAATTCTTGACCTCCATGCCATCCTTGGGAACAAATGGTCCACGATTGCAAGCCACTTGCCGGGGAGGACAGATAATGAGATAAAGAATTTTTGGAACACTCATCTGAAGAAGAAGTTGATTCAAATGGGTTATGATCCAATGACACACCAGCCTCGAACTGATATCTTCTCAGGCTTGTCCCATCTCATAGCCTTGGCCAATTTGAAACAACTCTTGAACCATCAGCTGCCATGGGAACAAAATGCTCTGAGATTACAAGCAGAGGCCATTCAACACTTACAACAACAACAGCACCTCCTGCAGCCACTATTAATAACTGAGGCTGAGCCTAACACAACAAAAAGCATAAACACTATTAATCATCTTTCAATTGATCACTACTTTGAAAACACCATCTCATCTTTTGGAAGTGGAAATCTTCAATTTATGAATGATTTTTCTATCCCTTTCTCTCCAATGCCTGAATTGAAAACACCGCCTTGTTCTTCCTATGAACCGTCATTAAGTGAGGACATGATCCAAGCCCCTCATGATGAATGCAAAGCGTTTTGTGATGAAGATGGTCCTCCCAATTCTCAGTGGCTTCCTTCATGCTCTGCCTCATCTTCTTCCCATGTGGTTCCAGTACCTGTGACAGAGATTTCATTGACTAATAATAATATGGCTGATAATTGCACTGCTTCTTCTATTTGGCCTGAGCTCTTGCTAGAGGACCCTATGTTCAATGGGATTGCTTTAGATTGA 975 0.4215 MGRSPCCDESGLKKGPWTPEEDHKLVNYIQKHGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILDLHAILGNKWSTIASHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDIFSGLSHLIALANLKQLLNHQLPWEQNALRLQAEAIQHLQQQQHLLQPLLITEAEPNTTKSINTINHLSIDHYFENTISSFGSGNLQFMNDFSIPFSPMPELKTPPCSSYEPSLSEDMIQAPHDECKAFCDEDGPPNSQWLPSCSASSSSHVVPVPVTEISLTNNNMADNCTASSIWPELLLEDPMFNGIALD* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1299 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja2g1299 324 CDD SANT 69 112 IPR001005 -
Lja2g1299 324 CDD SANT 16 61 IPR001005 -
Lja2g1299 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja2g1299 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 309 - -
Lja2g1299 324 SMART sant 66 114 IPR001005 -
Lja2g1299 324 SMART sant 13 63 IPR001005 -
Lja2g1299 324 Gene3D - 69 116 - -
Lja2g1299 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja2g1299 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja2g1299 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja2g1299 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja2g1299 324 Gene3D - 11 67 - -
Lja2g1299 324 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 309 - -
Lja2g1299 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1299 Lja-Chr2 12444952 12446689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1299 1 321 MYB Transcription Factor Family AT5G10280 51.020 2.83e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g1299 Myb_DNA-binding 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1299 K09422 - gmx:100781670 381.719