Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1291 ATGAAAGCAGGGAAGTCGAACCAGGAAGAAGACGAGTACGAGGAAGAAGACTTCGGTTCTTCTCAGAAACATGGTCCTTCTTCTGCCCCTAACACCAACAAAGATGCAAAAGCTACTGATAAGGCTAGTGCAATAAGATCGAAACATTCTGTAACCGAGCAGCGAAGAAGGAGCAAGATCAATGAGAGATTTCAGATACTGAGGGATATCATACCTCATAGTGAGCAAAAGAGGGACACAGCGTCATTTTTATTAGAGGTGATTGAGTATGTTCAGTACTTACAGGAGAAGGTGCAAAAATATGAAGGCTCATACCCGGGTTGGAGTCAAGAGCCCTCAAAGTTGATGCCATGGAGAAACAGTCATTGGCGTGTCCAAAACTTTGTTGGTCAACCTCCTGCTGTGAGGAATGGTTCGGGTCCAGTATCACCTTTTCCTGCAAAGTTCGACGATAGCAATGTTAGCATCTCTCCAACCATGCTTAGTGGCACCCAGAATATGATAGATCCTGATCAGAGCAGGGATATTCTCAGCAAGACAGCAGAGAGGCAACCTGATTTAGTAAGCAAGGGAATACCTCTGCCCTTGGCTATGCATGCAAACATGTCTGTTCCTGTAAGAAGTGATGGTGTACCTGCCCATCCTCTTCAGGGAACGCTTTCTGATGCACAATCAACTGAATGCCCAGCAACTAGTGAGCCACAGAACCAGCAGGACGAACTGACAGTTGAAGGAGGGACAATTAGCATTTCAAGTGTATACTCCCAAGGGCTGTTGAACAATCTAACTCAAGCGCTACAGAGTGCTGGTTTAGATCTGTCACAAGCTAGCATCTCTGTACAGATTAATCTTGGGAACCGGGCGAACATAGGACCAAGCGGTGGAACCTCTTCTACCAAGAATCATGATAACCCCCTTTGTAGCAGTCAGGCAATTGCGCATTTTAGAGATGCAGGCAGTGGAGAAGACTCAGATCATCAAGCTAAAAAACGAATGAGGAAAACATACAACTGA 1014 0.4556 MKAGKSNQEEDEYEEEDFGSSQKHGPSSAPNTNKDAKATDKASAIRSKHSVTEQRRRSKINERFQILRDIIPHSEQKRDTASFLLEVIEYVQYLQEKVQKYEGSYPGWSQEPSKLMPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRDILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRANIGPSGGTSSTKNHDNPLCSSQAIAHFRDAGSGEDSDHQAKKRMRKTYN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1291 337 MobiDBLite consensus disorder prediction 318 337 - -
Lja2g1291 337 MobiDBLite consensus disorder prediction 291 308 - -
Lja2g1291 337 CDD bHLH_AtBIM_like 43 119 - -
Lja2g1291 337 MobiDBLite consensus disorder prediction 291 337 - -
Lja2g1291 337 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Lja2g1291 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Lja2g1291 337 SMART finulus 50 100 IPR011598 GO:0046983
Lja2g1291 337 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 334 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lja2g1291 337 MobiDBLite consensus disorder prediction 22 38 - -
Lja2g1291 337 Gene3D - 42 114 IPR036638 GO:0046983
Lja2g1291 337 MobiDBLite consensus disorder prediction 39 58 - -
Lja2g1291 337 MobiDBLite consensus disorder prediction 1 58 - -
Lja2g1291 337 PANTHER TRANSCRIPTION FACTOR BIM2 1 334 - -
Lja2g1291 337 MobiDBLite consensus disorder prediction 218 240 - -
Lja2g1291 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 115 IPR036638 GO:0046983
Lja2g1291 337 MobiDBLite consensus disorder prediction 212 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1291 Lja-Chr2 12350638 12361066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1291 1 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 58.416 4.67e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g1291 HLH 5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1291 - - gmx:100816055 565.844