Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1275 ATGGAATCTTGGAGTAATGTCCCTGAAGAGAAAGGCTATTTGTTCCCTGATGAAGTGGATTTTTCCCTTGATGCTTTTATGAGAAGTACAAAAACATTGGTTGAATGGGACAACAAACCCTCTTGCAACTTTGAGAGAGATGGATTCAAATCAGACAGAGAGGTAGTTCAAAGCATGGAGTATGTGGACTTGGGATTTCCTCTGGAGACATCAAGCTGTGAACTAGACAGTAATTCTAGTAGAAGAGGGAATTCCTCCACCCATGTTATTGCTTTGGATTCATCCTTGGGGGATGAAGAATCTGAGTCACAGCATTTTAGTTCTCTAGTTGAATCCAAAACTCATTATTCCTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAGCAATGAAGATGTAGGAGAAAGGTTCACTTTAACATCTAGACACCCAACCACCGCGCTTGCAAAGAGAGCTCGGACTTCCAGCTTACCTGCTCAGGCTCCTGTGTGTCAAGTTTTTGGTTGTAACAAGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGTTCACTCCAAGACACCTAAAGTTATTGTCAATGGCGTTGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATTTGCTGGCCGAGTTTGATGATGGTAAGCGCAGTTGTCGCAGACGTCTAGCTGGACACAATGAACGTCGAAGGAAACCCCAGTTTGATTACATGACTGGTAACAAACACACAATTCTTCAGTCATATCAAGGCACCAAGTTTCTGGGGTCTTCATTACAGAACATACCCCAGTTTTCCTTTCAAGACATATTTCAAAGTAGCATCCTTTTCTCAGGGAAGCAGGATCAAATCTATCATAGTGAACATGTCAAATTGGAAGAGGAATTTTGCAGCCCTCTACTAGCAGCACCCGTCACACTTGATCAGGAGTTATCTAGCTGTGCTCTCTCTCTTCTGTCAACTCCATCGTCGCAGAATCCATCACGCCACTTAACAGGAAACCCCCTTATCTTTCAGGGAGCCTTCAAAGATGACCAAGTTTCTGCATCTCCTTTGAGGATAAACTCTGAGGAAGTCATCAAGAATGGATCCACAACGCCTTCTTCTGATGCTGGTCGCACTCTGCAAGTCCAAAGAGATGATATTTGCCAACCATTAGAATCATTCAATAACAAAGATTGCCTTTCCTCTGAACATGGAACTAGTGTTGATCTGTTTCAGTTGTCTTCTAATCTTCAGAGGGTGGAGCAGCAGAGAAACTCTGTTTTGGTAAAGTGGGAAATGGAGAACTATTGTTTCCCAACCGTGTAA 1341 0.4273 MESWSNVPEEKGYLFPDEVDFSLDAFMRSTKTLVEWDNKPSCNFERDGFKSDREVVQSMEYVDLGFPLETSSCELDSNSSRRGNSSTHVIALDSSLGDEESESQHFSSLVESKTHYSSLIDLKLGRLADCKGASNEDVGERFTLTSRHPTTALAKRARTSSLPAQAPVCQVFGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGVEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGNKHTILQSYQGTKFLGSSLQNIPQFSFQDIFQSSILFSGKQDQIYHSEHVKLEEEFCSPLLAAPVTLDQELSSCALSLLSTPSSQNPSRHLTGNPLIFQGAFKDDQVSASPLRINSEEVIKNGSTTPSSDAGRTLQVQRDDICQPLESFNNKDCLSSEHGTSVDLFQLSSNLQRVEQQRNSVLVKWEMENYCFPTV* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1275 446 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 63 306 - -
Lja2g1275 446 Gene3D - 160 230 IPR036893 GO:0003677|GO:0005634
Lja2g1275 446 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 319 427 IPR044817 GO:0003677
Lja2g1275 446 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 63 306 IPR044817 GO:0003677
Lja2g1275 446 ProSiteProfiles Zinc finger SBP-type profile. 166 243 IPR004333 GO:0003677
Lja2g1275 446 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 319 427 - -
Lja2g1275 446 SUPERFAMILY SBT domain 167 248 IPR036893 GO:0003677|GO:0005634
Lja2g1275 446 Pfam SBP domain 169 242 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1275 Lja-Chr2 12150779 12154917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1275 120 444 SBP-box Gene Family AT1G69170 41.551 1.85e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja2g1275 SBP 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1275 - - gmx:100820149 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1275 2 12150779 12154917 Lja2g1275 2 12150779 12154917 ECH