Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1273 ATGAACCACGAGGCTGAGAAAGTCACCATGGACCTGGCTCCCCCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGTAACACTGTTCTCGCTGTTGGCATCCCATGCAAGAGGCTGCTGGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTGAGCACCAGACCCCCAAATTCTCAAAATCAAACCATTGATCACACCCTCAGTCTCCAGGGGTTTTACGGTGATGCCAAAAAGGGGCAAGCATCATCTTCATCTTCTTCACCAACTACTTCTAGCGAGTCAGTGTCTCCTAAAGCAGCACCATTTGTTGTCAAACCACCTGAGAAGAAGCACCGTCTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCAAATCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCAGCAAAAAATTGGGCTAGGTTCATTCCAAATTCCCCAACCACTTCAGTTTCTGCAAGTAAAAATCATTTTGGGATTAAAAAGGAATTCTAA 540 0.4667 MNHEAEKVTMDLAPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQTIDHTLSLQGFYGDAKKGQASSSSSSPTTSSESVSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFIPNSPTTSVSASKNHFGIKKEF* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1273 179 SUPERFAMILY HMG-box 102 155 IPR036910 -
Lja2g1273 179 MobiDBLite consensus disorder prediction 83 103 - -
Lja2g1273 179 MobiDBLite consensus disorder prediction 81 116 - -
Lja2g1273 179 Gene3D High mobility group box domain 98 161 IPR036910 -
Lja2g1273 179 PANTHER PROTEIN YABBY 6-RELATED 8 171 IPR006780 GO:0007275
Lja2g1273 179 PANTHER PROTEIN CRABS CLAW 8 171 - -
Lja2g1273 179 Pfam YABBY protein 15 157 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1273 Lja-Chr2 12122377 12125080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1273 1 177 C2C2-YABBY Transcription Factor Family AT1G69180 62.366 1.27e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lja2g1273 YABBY 4e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1273 K25796 - gmx:100819079 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1273 2 12122377 12125080 Lja2g1273 2 12122377 12125080 ECH