Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1270 ATGTTTCATGGTTTCAATTCAATGCTGAGCTCGAGGCAATCCTTCTACACCTCTTCCTTGTCCTCATCACTATTATGTATCATTCTTCTCCAAGCTAATCTTCTCTATGGCCTTGCCTTCTCTGCTAACCATGAAGCCTCAACTCTCTTCTCATGGCTCCATAGTTCTTCTTCATCATCACCACCCCCTCCATCTTTCTCTAACTGGAATATTCTTGATAACAATCCATGCAACTGGACCTGTATTACATGCTCCTCACTAGGCTTTGTCACTGAAATCAACATACAATCCACCCCTCTTGAGCTTCCCGTACTTTTCAATCTCTCTTCATTCCCCTTTCTTCACAAGCTTGTAATTTCTGATGCCAATCTCACTGGAACCATCCCAGTTGACATTGGTGATTGCTCTGCTCTCTATGTTATTGACCTGAGCTCCAACAATCTTGTTGGTTCTATTCCTGCAAGCATTGGCAAACTCCAGAAACTGGAGAATTTGTCTTTGAACTCTAACCAGCTTACTGGGAAAATTCCAGATGAGATAAGCAACTGCATTAGTCTGAAAAATCTTCTCCTTTTTGATAATCAGCTAGATGGGACTCTCCCACCTTCTCTGGGAAAGTTGTCAAAACTTGAGGCTCTCAGAGCAGGAGGAAACAAAGGTATAGTTGGAGAAATCCCTGAAGAGCTTGGAGAATGCAGAAATTTGACTGTGTTGGGGTTGGCTGATACAAGAATATCAGGTTCTTTGCCTGCTTCTTTGGGTCAGCTTAGAAAGCTTCAAACTTTGTCAATCTATACCACTATGCTATCTAGTGAAATTCCACCAGAGTTAGGTAATTGTTCTGAACTTGTTGACTTGTTCCTATATGAAAATAGCCTATCAGGGTCTATTCCACCTGAGCTTGGCAAGTTAAAAAAGCTGGAGCAGTTGTTTCTATGGCAGAATAGTCTTGTGGGAGCTATCCCAGAAGAGATTGGTAACTGTTCAAGCTTGAGGAATATTGACCTCTCTTTGAATTCTCTATCTGGAACTATACCTTTGTCTTTGGGGGGTCTTTTAGAGCTTGAAGAGTTCATGATTAGTGATAACAATGTGTCTGGCTCTATACCATCAAGTCTCTCAAATGCTAAAAGTCTTCAACAGTTGCAAGTTGACACAAACCAGCTCTCAGGCTTGATTCCACCAGAGCTTGGGAAGTTGGAAAATCTATTAGTGTTCTTTGCTTGGCAGAACCAGCTTGAAGGAAGCATTCCTTCAACTTTGGGAAACTGCAGCAATTTACAAGCGCTGGACTTGTCTCGCAACGCGCTCACTGGTAGCATCCCTGGTGGCCTATTTCAGCTCCAAAACCTCACAAAGCTACTTCTCATTTCCAATGACATATCAGGTTTTATACCATCAGAAATAGGAAGCTGCAGCTCACTCATAAGGTTGAGGCTTGGAAACAACAGGATCACGGGCAGCATACCTAAGACAATTGGCGGCCTCAAAAGCCTGAACTTCTTAGATCTCTCCGGGAACCGCCTCTCCGGGCCAGTGCCTGATGAGATTAGAACCTGCACAGAACTGCAAATGATAGACTTCAGCAGCAACAGCTTAGAAGGTCCACTTCCAAATTCTTTGTCATCACTGTCTTCACTGCAGGTACTAGATGCATCTTCAAACAAATTCTCAGGTTCCGTACCGGCGAGTTTAGGCCGTCTTGTTTCTTTAAATAAGCTAATCCTAGAGAATAACTTATTCTCTGGAACCATTCCTGCATCCCTTAGCATGTGCTCAAATCTCCAACTACTTGATCTCAGTAGCAACCAACTCACTGGAAGCATACCAGCAGAGCTTGGCCATATAGAGACACTAGAAATTGCTCTTAATCTTAGTTGCAATTCACTTAGTGGAGCAATCCCAGATCAGATATCTTCTCTCAACAAGCTTTCCATACTTGACCTTTCACATAATCAATTAGAAGGAGATTTGCAACCACTTGCTGAGCTTGATAACCTTGTCTCCCTCAATGTTTCTTATAACAAATTAAGCGGATACCTACCAGATAACAAGCTTTTCAGGCAGTTATCATCGAAAGACCTCACTGGAAATCAAGGGCTATGCAATTCAGGTGAAGACTCATGCTTTGTAAAGGATTCTGCCAAGGATGATATGAAATTGAATGGAAATGATGCAAGGAAGTCACAGAAGCTCAAAATAACCATTGGATTGCTGATAGCCTTAGCAGTGATAATGTTAGTTATGGGGGTAACTGCTGTGGTCAAAGCAAAGAGAACAATCAGAGATGATGATTCAGAATTAGGAGACTCATGGCCTTGGCAATTCATACCATTCCAGAAGCTAAGTTTTTCAGTTGAACAAATTCTAAGATGCTTAGTTGATAGGAATATAATTGGGAAGGGATGTTCCGGTGTTGTTTATCGCGCTGAAATGGATACTGGTGAAGTCATTGCAGTGAAGAAACTATGGCCAATAACAAATGATGCTGCAGTGGATGTTTTCAAGGAAGATAAAAGTGGAGTTCGCGATTCGTTCTCAGCTGAGGTGAAGGCCCTTGGCTCGATTCGGCACAAGAACATTGTCAGGTTCTTGGGTTGTTGTTGGAACAGGAGAACAAGGTTGCTTATCTTTGATTACATGGCAAATGGAAGTTTAAGCAGTTTACTTCATGAGAGGAGTGGGAATTCTCTAGAATGGGAACTCAGGTACAGAATCTTGTTAGGTGCTGCAGAAGGTTTGGCTTATCTGCACCATGACTGTGTCCCTCCTATAGTCCACAGAGATATTAAAGCCAATAACATCCTCATTGGCCTTGAATTTGAACCTTACATTGCTGACTTTGGCTTGGCGAAGCTGGTTGATGATGGTGATTTTGGTCGTTCTTCCAATACAGTTGCTGGTTCCTATGGATATATTGCTCCAGAATATGGCTACATGTTGAAGATCACAGAGAAGAGTGACGTTTACAGCTATGGTGTGGTGTTGCTGGAAGTCTTGACAGGTAAGCAACCAATTGATCCAACCATACCAGATGGTCTACATGTTGTTGATTGGGTGAGACAGAAAAGGGGTATTGAAGTGCTTGATCCAAGCTTACTCTCTAGACCAGAATCAGAAATAGAGGAAATGATGCAGGCACTGGGAATAGCCTTGTTGTGTGTGAATTCATCCCCTGATGAGAGGCCAACAATGAGAGATATAGCCGCAATGCTCAAGGAGATAAAGCATGAGAGGGAGGAATATGCAAAATTTGATGTGCTTCTAAAAGGGTCTCCTGCAAATAGAAGCTGTGGAGGTGGTGGTGGAGTTCTGGCAACATCTTCATCAGTATCAAGAAGCAACAACACAAGCTTCTCTGTGTCTTCTCTGCTTCATTCATCTTCAAGTGCCAACCTGAGTTTCAAATGA 3411 0.4251 MFHGFNSMLSSRQSFYTSSLSSSLLCIILLQANLLYGLAFSANHEASTLFSWLHSSSSSSPPPPSFSNWNILDNNPCNWTCITCSSLGFVTEINIQSTPLELPVLFNLSSFPFLHKLVISDANLTGTIPVDIGDCSALYVIDLSSNNLVGSIPASIGKLQKLENLSLNSNQLTGKIPDEISNCISLKNLLLFDNQLDGTLPPSLGKLSKLEALRAGGNKGIVGEIPEELGECRNLTVLGLADTRISGSLPASLGQLRKLQTLSIYTTMLSSEIPPELGNCSELVDLFLYENSLSGSIPPELGKLKKLEQLFLWQNSLVGAIPEEIGNCSSLRNIDLSLNSLSGTIPLSLGGLLELEEFMISDNNVSGSIPSSLSNAKSLQQLQVDTNQLSGLIPPELGKLENLLVFFAWQNQLEGSIPSTLGNCSNLQALDLSRNALTGSIPGGLFQLQNLTKLLLISNDISGFIPSEIGSCSSLIRLRLGNNRITGSIPKTIGGLKSLNFLDLSGNRLSGPVPDEIRTCTELQMIDFSSNSLEGPLPNSLSSLSSLQVLDASSNKFSGSVPASLGRLVSLNKLILENNLFSGTIPASLSMCSNLQLLDLSSNQLTGSIPAELGHIETLEIALNLSCNSLSGAIPDQISSLNKLSILDLSHNQLEGDLQPLAELDNLVSLNVSYNKLSGYLPDNKLFRQLSSKDLTGNQGLCNSGEDSCFVKDSAKDDMKLNGNDARKSQKLKITIGLLIALAVIMLVMGVTAVVKAKRTIRDDDSELGDSWPWQFIPFQKLSFSVEQILRCLVDRNIIGKGCSGVVYRAEMDTGEVIAVKKLWPITNDAAVDVFKEDKSGVRDSFSAEVKALGSIRHKNIVRFLGCCWNRRTRLLIFDYMANGSLSSLLHERSGNSLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMLKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGIEVLDPSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSPANRSCGGGGGVLATSSSVSRSNNTSFSVSSLLHSSSSANLSFK* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1270 1136 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 21 1129 - -
Lja2g1270 1136 Pfam Leucine rich repeat 450 509 IPR001611 GO:0005515
Lja2g1270 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 925 937 IPR008271 GO:0004672|GO:0006468
Lja2g1270 1136 Gene3D Ribonuclease Inhibitor 411 712 IPR032675 -
Lja2g1270 1136 SMART serkin_6 793 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1270 1136 Gene3D Transferase(Phosphotransferase) domain 1 881 1090 - -
Lja2g1270 1136 PRINTS Leucine-rich repeat signature 595 608 - -
Lja2g1270 1136 PRINTS Leucine-rich repeat signature 641 654 - -
Lja2g1270 1136 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 21 1129 - -
Lja2g1270 1136 SMART LRR_sd22_2 592 613 - -
Lja2g1270 1136 SMART LRR_sd22_2 520 546 - -
Lja2g1270 1136 SMART LRR_sd22_2 641 666 - -
Lja2g1270 1136 SMART LRR_sd22_2 304 336 - -
Lja2g1270 1136 SMART LRR_sd22_2 159 182 - -
Lja2g1270 1136 ProSitePatterns Protein kinases ATP-binding region signature. 799 822 IPR017441 GO:0005524
Lja2g1270 1136 SUPERFAMILY RNI-like 368 699 - -
Lja2g1270 1136 SUPERFAMILY RNI-like 117 462 - -
Lja2g1270 1136 ProSiteProfiles Leucine-rich repeat profile. 643 665 IPR001611 GO:0005515
Lja2g1270 1136 SUPERFAMILY Protein kinase-like (PK-like) 771 1073 IPR011009 -
Lja2g1270 1136 Gene3D Ribonuclease Inhibitor 41 195 IPR032675 -
Lja2g1270 1136 Pfam Leucine rich repeat N-terminal domain 43 85 IPR013210 -
Lja2g1270 1136 SMART LRR_typ_2 641 660 IPR003591 -
Lja2g1270 1136 SMART LRR_typ_2 664 689 IPR003591 -
Lja2g1270 1136 SMART LRR_typ_2 424 448 IPR003591 -
Lja2g1270 1136 SMART LRR_typ_2 256 280 IPR003591 -
Lja2g1270 1136 SMART LRR_typ_2 544 567 IPR003591 -
Lja2g1270 1136 SMART LRR_typ_2 496 520 IPR003591 -
Lja2g1270 1136 SMART LRR_typ_2 593 616 IPR003591 -
Lja2g1270 1136 SMART LRR_typ_2 304 328 IPR003591 -
Lja2g1270 1136 SMART LRR_typ_2 159 183 IPR003591 -
Lja2g1270 1136 SMART LRR_typ_2 568 592 IPR003591 -
Lja2g1270 1136 Gene3D Phosphorylase Kinase; domain 1 778 880 - -
Lja2g1270 1136 ProSiteProfiles Protein kinase domain profile. 793 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1270 1136 Gene3D Ribonuclease Inhibitor 295 395 IPR032675 -
Lja2g1270 1136 Pfam Protein tyrosine and serine/threonine kinase 797 1071 IPR001245 GO:0004672|GO:0006468
Lja2g1270 1136 Gene3D Ribonuclease Inhibitor 196 294 IPR032675 -
Lja2g1270 1136 Pfam Leucine Rich Repeat 594 614 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1270 Lja-Chr2 12066505 12070996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1270 40 1091 Receptor kinase-like Gene Family AT5G56040 49.110 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja2g1270 PK_Tyr_Ser-Thr 9.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1270 - - gmx:100818541 1779.99