Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1264 ATGGCGATGATGGAAGGGGTGCAGAAGAACACTCTCTACGTCGGAGGGTTAGCGGAGGAGGTCAACGAGTCAATCCTCCACGCCGCCTTCATCCCCTTCGGCGACATCAAAGACGTGAAGACGCCGCTCGACCAGGCCACACAGAAGCACCGCTCGTTCGGCTTCGTCACGTTCCTCGAGAGAGAAGACGCCGCCGCCGCCATGGACAACATGGACGCCGCCGAGCTCTACGGCCGCGTCCTCACCGTGAATTACGCCCTCCCGGAGAAAATCAAGGGCGGTGAACACGGTTGGGCTGCGCAGCCAATTTGGGCGGATGCGGATACGTGGTTTGAGCGGCAGCAGCAGGAGGAGGAGATGCGGCGGTTGGAAGCTGAGAGTCGAGCGGCGAATCAGGCTGCTGAGGATTTGCGGAGGAAGCAAGCTGTTGAGGATAGAGAAGGGGAGAAAGATGATGCAATGGAGGTTGATCCTATGGCAAAGGCTGAAGCTGAGGTTCTTCAACAGAATCAGTAG 516 0.5853 MAMMEGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDAAELYGRVLTVNYALPEKIKGGEHGWAAQPIWADADTWFERQQQEEEMRRLEAESRAANQAAEDLRRKQAVEDREGEKDDAMEVDPMAKAEAEVLQQNQ* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1264 171 SUPERFAMILY RNA-binding domain, RBD 8 94 IPR035979 GO:0003676
Lja2g1264 171 Coils Coil 113 140 - -
Lja2g1264 171 MobiDBLite consensus disorder prediction 117 158 - -
Lja2g1264 171 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 6 170 - -
Lja2g1264 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Lja2g1264 171 CDD RRM_PPIE 12 84 IPR034168 GO:0003723
Lja2g1264 171 Gene3D - 3 153 IPR012677 -
Lja2g1264 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Lja2g1264 171 PANTHER TRANSFORMER-2-RELATED 6 170 - -
Lja2g1264 171 SMART rrm1_1 11 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1264 Lja-Chr2 12006707 12007759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1264 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 36.709 1.76e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1264 - - ccaj:109797476 286.96