Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1254 ATGAATGATTCTTCAGGAGATAACTGGCTTAATCCGTTTGATGACGAGCTTTATATCATCGATGAGGATGATAGTCTGAATTCTAGCCCTGCCAACGGTTTGAAGCAGGGTGTGAATGAAGGGGATAATGATGGGGAAAATTTTGTGGATGTCGATGAGATGTTTGAAACTGGAAATGACAGTCAAAAAAACTCTGATGTAGAAGTTAAAGTCATGAAAAGGATTACTGAATTGTCTGCAAACGACATTAGAGGGATGGATTTCTCTTCTGAGGAGGAAGCATGTGAATTCTATTCTAAATATGCTCGTATCCGTGAATTCTCTCCAAGAAAAGATGATGTATACAAGGATGATGATGGCAAGATTATCTCACGACAGGTGGTGTGCAATAGGGCTGGACAAAGGCATCAGAAGCATATGCATAATAGTGGCAGAAGAAAACAACCTAAGCCTATTACTAGAGTGGGTTGCCTTGCTAGAATTCGATTTCGTTGTTTTTCTAGCAGTAAAAGGTGGAAAGTGGTTTTTTTTTGCGATGAACACAATCACCCATTAACACCATATAAGCATGTTCATTTGATTCCAAAATTCCGGCAATTGAGTGAAGGGGACAAAGCTCAAGCAGAAGGTATGAACCTATTTGCCAACAATCCATGGATTGATACGATGTATGAGACAAGAGCTTCTTGGGCAAGCACCTTCATGCAAGACAAATTTTTTGCCGGTATTAGGACGACATCCTTATGTGAAGGTATTAACTCATTCATAAAGAATTATCTGCATTGTAAGTGTTCCTTGTTGGATTTTCTTTTCAATTTTGAGCGGGCTATGAAGAAATACAGGCACAATGAGTTGGAATCTGATTTTAAGTCTTCTTATGGTGAGCCTGTTATGACAACAGCACTTAGTGGCATTGAGTATGGAGCTGCCAAAATATTAACAAGGAGCATGTTTTGGGAAGTCAAGGGTCAAATTGAGGATGCCCTGGGGCTAAATGTGGAGCGTTCTGAGGTGGCCAATATTGTGATGATGAAAATGAGAAAAATTAACAATCGCAGAAAAGAATATATTGTTGTTTATGATAAGAACCAGAAAAAGTTTGTATGTGAATGTGGTTATTTTGAGTTTTATGGCATCCCTTGTTCTCATATAATAGCTGGGATGAGAAGTGGGTATATTGATGAATTTCCAAGCAATCTAGTTTCTAAGAGGTGGTTGAAAACAGCCAAGTCTGCTCATGTGTATTCAATTTCAGAGCCTAGTATTCATTCACAGAATATGAAATTGTTGCGAAAAGGAGCTATGTCTGCCGCATGCAACTATCTCGCAGAAATAGCATGCGAAAAGGATGATGATTTTTCAAGTGTAATGGAAGACATTTATAAGCTGTTGAGGGATGTTCAGAAGAGTCGCAAACCGGGTTTTACAACAAAGAGTGCAGCCTTTAATGTGGGTGATCCAACTGTTGTACAGGGTAGAGGTGCCCCCAAGAAGACCAGAACTGTCACCAAGAGAAGGCATTGCTCAAATTGCAGGGGTATTGGACACACGATTCGTACGTGCCCGGTTTTGCTTTATCCTGATCAAGTCAATAACAGTGAAACAGGTGAATCTGCAAGTGAAGGAATTGAGGACAGCACAGACGACGAGACAAACGTTGGCAGCGTAGATCGGCAGAATAAGGGGGCTTCGGTGGCAAGTAAACTTAAATCGCAGCAACGGAAGCAGGGAAATGACTCCTCATCCACCCAAAACAAGCGTTCAAATCAGAACACGGTGTCGACAAAACAAAATAAGCGTAAATCTAAGCAGCGAGAAGTCCCAGTCATGATTCATTCAAGCCAAGTATCTGTGAATGAAGTGACTCAGAGTTCACCGAATAATGCAGGTCGCGGTGATGTGGATAACAACAGAGTTACTTTGTTGCCCCAGCATCCACAGGAAATACCTTTGACCCAAGAATCTGTGAATCAGGTACAGGTTTATAACATGGAGCCTATTGTACAACAAGTCCACTATCCTGTTGTTCGTGCTTCAGCTGGACTTCCATTTTTGCAACCTACTTATGCCGTGAATATGACTAATGGAGTTCAGGTGTTTCCACAGTTTATACAGCACCAAAACGTCCAGGTTCCTTACCAAGGAGTTCAGATGCAAACTCTATTTCAAGCTGGACCTTCTGGCTTACTCCCGACATTTTCATCGACGTTGGCGGCAGTCGATAGGAGACACAATAGAAATTCAAGTTTAGGAAATAATTGA 2262 0.4111 MNDSSGDNWLNPFDDELYIIDEDDSLNSSPANGLKQGVNEGDNDGENFVDVDEMFETGNDSQKNSDVEVKVMKRITELSANDIRGMDFSSEEEACEFYSKYARIREFSPRKDDVYKDDDGKIISRQVVCNRAGQRHQKHMHNSGRRKQPKPITRVGCLARIRFRCFSSSKRWKVVFFCDEHNHPLTPYKHVHLIPKFRQLSEGDKAQAEGMNLFANNPWIDTMYETRASWASTFMQDKFFAGIRTTSLCEGINSFIKNYLHCKCSLLDFLFNFERAMKKYRHNELESDFKSSYGEPVMTTALSGIEYGAAKILTRSMFWEVKGQIEDALGLNVERSEVANIVMMKMRKINNRRKEYIVVYDKNQKKFVCECGYFEFYGIPCSHIIAGMRSGYIDEFPSNLVSKRWLKTAKSAHVYSISEPSIHSQNMKLLRKGAMSAACNYLAEIACEKDDDFSSVMEDIYKLLRDVQKSRKPGFTTKSAAFNVGDPTVVQGRGAPKKTRTVTKRRHCSNCRGIGHTIRTCPVLLYPDQVNNSETGESASEGIEDSTDDETNVGSVDRQNKGASVASKLKSQQRKQGNDSSSTQNKRSNQNTVSTKQNKRKSKQREVPVMIHSSQVSVNEVTQSSPNNAGRGDVDNNRVTLLPQHPQEIPLTQESVNQVQVYNMEPIVQQVHYPVVRASAGLPFLQPTYAVNMTNGVQVFPQFIQHQNVQVPYQGVQMQTLFQAGPSGLLPTFSSTLAAVDRRHNRNSSLGNN* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1254 753 ProSiteProfiles Zinc finger SWIM-type profile. 356 392 IPR007527 GO:0008270
Lja2g1254 753 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 49 195 - -
Lja2g1254 753 MobiDBLite consensus disorder prediction 556 597 - -
Lja2g1254 753 MobiDBLite consensus disorder prediction 24 43 - -
Lja2g1254 753 Pfam SWIM zinc finger 369 386 IPR007527 GO:0008270
Lja2g1254 753 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 215 481 - -
Lja2g1254 753 Pfam FAR1 DNA-binding domain 96 186 IPR004330 -
Lja2g1254 753 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 49 195 IPR031052 GO:0006355
Lja2g1254 753 SMART 26again6 367 394 IPR006564 GO:0008270
Lja2g1254 753 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 215 481 IPR031052 GO:0006355
Lja2g1254 753 MobiDBLite consensus disorder prediction 608 635 - -
Lja2g1254 753 ProSitePatterns EF-hand calcium-binding domain. 42 54 IPR018247 -
Lja2g1254 753 MobiDBLite consensus disorder prediction 532 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1254 Lja-Chr2 11879230 11882554 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja2g1254 FAR1 2.9e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1254 - - aip:107640898 319.701