Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1250 ATGAAGATGGAGAAGTACCCGAGAGATCTGCTTCAGAGATTCCTCGTGTCAAGTGGTGGCAGTGAGAAGATTGATAACAGAACGCAGACACAGACACAGCAACATCATCAGGGTGAAGAAGAAGAGGAGGAAGATGAAGGGATTGAGCTGCACCTGGGACTCTCGTTGGGTGGAAGATTTGGGGTGGACAAGCATGCCAAGAACCAGCACCTTGTGCGCTCTTCCTCCGTTGTGGGGACAATGCCTCTGCTCCGGGAGGATTCCGTGGCGGCGTCGCCGGCGTACTCGACCCTTGTGAGATCTTCATCGCTGCCATCGGAGACTGAGGAGGAGTGGAGGAAGCGGAAGAAGTTGCAGACGCTGCGGAGGATGGAGGCTAAGAGGAGGAGGTCGGAGAAGCAGAGAGGTTCCAAGTCGGAGAGAGATGTCGCCGGCGTGAGTTCCGGTGGTGGTGGTTTGGAGGAAGTGGAGGGTGCAGGTGCAAGTGCAATAACAATGGGGTTGAATAGACTTAGTTCTTCAACGGCGACGCCACCACCGTTTGGGTTGCCGAGTTGGGGTGTGGCGGGAAAGCAAGTTGTTCTTGGTGATGTTTTGGGGAAAGGGAAAGTTGGGGTTGGTTTTCAGGGGTTGTTTGCACAACCATCTTCTCAGGGTTCATCAGCGGAATCCCAAGGGGGAAGCTCCTCATCAGTTTCTGAAATGGACAGCAAGCCTGTTCTAGGATCAAGTAGTTGTGGTGAAGCAAGAAGTCCAGCTAGCACTCAATCCTTACAGGAAAGAAGCAACCAGGATGCTATGCGTTCTTCCGGGCCAAAGACAGAGGAGAACAAGATAAGATCTTCCAGAGCTGAGGTGGAGAATCTATGTAAGAAACCTAATCCTTCCCAAAACATGGGGAGGGATTTTGGGACAAACCCAATGGAAGACATGCCTTGTGTGTTTACAAAAGGGGATGGCCCAAATGGTAAGAGAATTGAGGGAATCTTATATAAATATGGGAAAGGGGAGGAAGTGAGGATAATGTGTGTGTGCCATGGGAACTTTCTGTCTCCTGCAGAGTTTGTTAAGCATGCTGGTGGTGGCGATGTTGCTCACCCACTTAGGCAGATTGTTGTAAACCCTTCTGGTGCTCCCTTTTTGTGA 1146 0.5113 MKMEKYPRDLLQRFLVSSGGSEKIDNRTQTQTQQHHQGEEEEEEDEGIELHLGLSLGGRFGVDKHAKNQHLVRSSSVVGTMPLLREDSVAASPAYSTLVRSSSLPSETEEEWRKRKKLQTLRRMEAKRRRSEKQRGSKSERDVAGVSSGGGGLEEVEGAGASAITMGLNRLSSSTATPPPFGLPSWGVAGKQVVLGDVLGKGKVGVGFQGLFAQPSSQGSSAESQGGSSSSVSEMDSKPVLGSSSCGEARSPASTQSLQERSNQDAMRSSGPKTEENKIRSSRAEVENLCKKPNPSQNMGRDFGTNPMEDMPCVFTKGDGPNGKRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHAGGGDVAHPLRQIVVNPSGAPFL* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1250 381 PANTHER NINJA-FAMILY PROTEIN AFP1 3 378 - -
Lja2g1250 381 Coils Coil 114 134 - -
Lja2g1250 381 MobiDBLite consensus disorder prediction 94 158 - -
Lja2g1250 381 Pfam Ethylene-responsive binding factor-associated repression 43 79 IPR012463 -
Lja2g1250 381 MobiDBLite consensus disorder prediction 125 140 - -
Lja2g1250 381 Pfam Putative nuclear localisation signal 98 237 IPR032310 -
Lja2g1250 381 MobiDBLite consensus disorder prediction 213 302 - -
Lja2g1250 381 MobiDBLite consensus disorder prediction 271 287 - -
Lja2g1250 381 PANTHER AFP HOMOLOG 2 3 378 IPR031307 GO:0007165
Lja2g1250 381 MobiDBLite consensus disorder prediction 213 240 - -
Lja2g1250 381 MobiDBLite consensus disorder prediction 19 33 - -
Lja2g1250 381 MobiDBLite consensus disorder prediction 17 48 - -
Lja2g1250 381 MobiDBLite consensus disorder prediction 247 270 - -
Lja2g1250 381 Pfam Tify domain binding domain 339 373 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1250 Lja-Chr2 11808998 11813587 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1250 - - mtr:MTR_5g045370 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1250 2 11808998 11813587 Lja2g1250 2 11808998 11813587 ECH