Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1222 ATGTTTGGGTTTAGAAAAGCACCACCAAAGCCTGCAACTACCGGCGCCGAACCGGAAAAGAACACAACCATGACACAAGATAGGCGAACCACTTCAGCGCCTGTTCTCCCCATGCCAAAGTCTAAAGGGAACTATTTTGATGATGATGATGACGATGATTGGGGGAGAAAGCCTTCCACCACTAAATCCTCCGGGGGCCTAGAGAGCAAGAGTGTTCAGGAGCTTGAGGACTATGCAGTGAACAAGGCTGAGGACACGACGAGGAGCGTTAACAATTGCCTGAGGATTGCTGAGGACATTAGAGGGGATGCAGCAAGGACCCTTGACATGTTGCACCAGCAGGGTGACCAGATAACAAGGACTCATAATATGGTTGTTGATACTGAGAAGGATTTGAGTCGGGGTGAAAAACTCCTAAACAATCTTGGGGGCATGTTCTCAAAACCCTGGAAGCCAAAGAAGACCCGGGAAATCCAAGGCCCTGTAATTACCTCAGATAATCCATCCAAAAAGAATGTGAAGAACAAGGAAGACAGGGAAAAATTGGGCTTAGCTCCTTTGCCTAAGGGACACTCTGCTCCTTCCACACCTGTTCCTGAATCAGCCAATGCCTATCAGAAAATTGATTATGAAAAAGCTAAACAAGACGATGGACTCTCAGATTTGAGTAATATCTTAGGCGATTTGAAGGGTATGGCAATTGATATGGGATCAGAACTTGACAAGCAAAATAAAGCTCTTGATCATCTTAGTGACGATGTAGATGAGCTGAACTCTCGAGTTAAAGGTGCAAACCAGCGTGCACGCAAATTAGTAGGGAAGTGA 825 0.4594 MFGFRKAPPKPATTGAEPEKNTTMTQDRRTTSAPVLPMPKSKGNYFDDDDDDDWGRKPSTTKSSGGLESKSVQELEDYAVNKAEDTTRSVNNCLRIAEDIRGDAARTLDMLHQQGDQITRTHNMVVDTEKDLSRGEKLLNNLGGMFSKPWKPKKTREIQGPVITSDNPSKKNVKNKEDREKLGLAPLPKGHSAPSTPVPESANAYQKIDYEKAKQDDGLSDLSNILGDLKGMAIDMGSELDKQNKALDHLSDDVDELNSRVKGANQRARKLVGK* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1222 274 SMART tSNARE_6 75 142 IPR000727 -
Lja2g1222 274 SMART tSNARE_6 204 271 IPR000727 -
Lja2g1222 274 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 274 - -
Lja2g1222 274 MobiDBLite consensus disorder prediction 16 32 - -
Lja2g1222 274 SUPERFAMILY SNARE fusion complex 70 141 - -
Lja2g1222 274 Gene3D - 66 144 - -
Lja2g1222 274 Coils Coil 240 274 - -
Lja2g1222 274 MobiDBLite consensus disorder prediction 170 185 - -
Lja2g1222 274 CDD SNARE_SNAP25N_23N_29N_SEC9N 77 141 IPR044766 GO:0005484|GO:0031201
Lja2g1222 274 MobiDBLite consensus disorder prediction 143 203 - -
Lja2g1222 274 MobiDBLite consensus disorder prediction 1 70 - -
Lja2g1222 274 Gene3D - 206 273 - -
Lja2g1222 274 CDD SNARE_Qc 212 270 - -
Lja2g1222 274 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 274 - -
Lja2g1222 274 SUPERFAMILY SNARE fusion complex 204 271 - -
Lja2g1222 274 MobiDBLite consensus disorder prediction 43 58 - -
Lja2g1222 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1222 Lja-Chr2 11550958 11552738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1222 200 274 SNARE and Associated Proteins AT3G09740 37.333 8.55e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1222 K18211 - gmx:100806781 437.573