Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1208 ATGACACTGTACATGCCATTGTTCAGGTCATGTTCTAGCCTAAGACCACTCACCCAGCTCCACGCACACCTCGTCGTCACTGGCCTCCACCGTGACCAACTTGCCTCTACCAAGCTTCTCGAGTCCTACGCTCAAATGGGTTGTCTCCAATCATCAAGACTCGTTTTCTACGCATACCCATCTCCTGATTCCTTCATGTTTGGAGTTCTCATCAAGTGTTACCTCTGGAACCACCTGTTTGACCAAGTGCTTTCGCTTTATCATCACCAAATCCACAAGGGTTCTCAGCTGATACAGAACTGCAGCTTCCTGTACCCTTCTGTTCTGAGGGCTGCTTCTGGTGCTGGTGACTTGGTTTCAGGCAGAAAAATGCATGGGAGGATAGTTAAATCCGGGTTTAGCACTGATCATGTCATTGGAACCTCGCTGCTGGGATTGTATGGGGAGTTTTGCTGCTTAAATGATGCTCGGAAGGTGTTTGATGAAATGTGTGACAGGGATTTGGTTTCCTGGAGCTCCATTGTTTCATGTTATATTGAGAATGGGCAGCCGAGAGAAGGACTTGAGATGTTTCGTTCGATGGTCTCCGAGGGAATTAAACCTGACTCGGTTACGTTGCTTAGCATAGCTGAGGCCTGTGCCAAAGTTAGTTGTTTGAGGCTAGCTAAATCTGTTCATGGATATGTGATAAGAAAAGAAATGGTTGATGATGCCAGATTGAATAACTCTCTCATTGTTATGTATAGCCAGTGTGGACACGTGTGTAGAGCGAAAGGGCTTTTTGAGTACCTCCATGATCCAAGTACTGCTTGTTGGACTTCTATGATTTCATCCTATAATCAAAACGGGTGCTTTGAAGAAGCAATTGATACTTTCATTCAGATGCAGGAGTTAGAAGTAGAACCCAATGAAGTGACCATGATTAATGTTCTGCATTTCTGTGCTAGATTAGGCCGGTTAAAGGAGGGGAAGTCAGCTCATTGCTTTATTTTGAGGAAAGCAATGGATGCTGCTGATCTTGATCTAGGGCCTGCACTGATAGATTTCTATGCTGCATGTTGGAAAATAAGCAGTTGTGAAAAGCTTCTTCATTTAATGGGAAACAATAATATTGTATCATGGAATACACTTATATCTTTCTATGCTCGGGAGGGTTTAAACCAAGAGGCAATGACACTCTTTGCACTTATGTTTGCAAAGGGGCTAATGCCTGATTCATTTAGTTTAGCAAGTTCTATTTCAGCAACTGCAAGTGCTGGTTCAATACAATTTGGACAGCAGATACACGGCAATGTCATGAAAAGAGGCTTCATGGACGAATTTGTTCAGAACTCCTTGATGGATATGTATTCAAAATGTGGCTTTGTGGACCTGGCATACTCGATTTTTGACAAGATTACGCAGAAAAGTATTGTGACATGGAACTGTATGATTTGTGGGTTTTCACAGAATGGCATTTCAGTAGAAGCTCTCAACCTATTTGATGAGATGTACTTCAATAGTCTGGAAATTAATGAAGTAACCTTGTTAAGTGCAATCCAAGCTTCCACCAATTTGGGTTATCTTGAGAAGGGAAAATGGATTCACCACAAGATCATTGTTTCCGGTGTACGGAAGGATCTTTACATTGACACAGCCCTGGTAGACATGTACGCGAAGTGTGGAGACCTTCAAACAGCCCAAAGAGTTTTTAATAGCATGTCAGAGAAAAGTGTGGTGTCATGGAGCACCATGATTGCCGCTTATGGCATCCATGGTCGAATAAATGCTGCCATCTCACTCTTCACTAAAATGGTTGAGTCAGGAATTAAACCAAATGAAGTAACCTTCATGAACATCTTATCTGCCTGCAGGCATGCTGGATCAGTGGAGGAAGGGAAATTATATTTCAACTCAATGAAGGATTATGGCATAGTGCCCAATGCTGAACATTTTTCCTCCATAGTTGACCTTCTAAGCCGCGCCGGTGATATCAATGGAGCATATGAAATAACTAAATCGATGTTCCGGCCTATAGATGCTAGCATATGGGGAGCTCTGCTGAATGGATGTAAAATACATGGCAGGATGGACATGATTGAAAACATCGATAAAGAACTTAGAGAAATAAGTACAGATGATACGGGGTACTATACTTTGTTATCTAACATATATGCAGAAGGAGGGAACTGGTATGAATCCAGAAAAGTGAGATCAAGGATGGAAGGAATGGGCCTGAAGAAGGTACCTGGGTACAGCACAATTGAGATAGATAGGAAAATCTTCAGATTTGGAGCTGGAGATACTTCTGAGTTGCTAATGAAAGAAATTTACATGTTTTTAGAAAAATTTCAAAGCTTGGCACAGGAACAAGGATGTGATGTAGAATGCTATAGTACAGTGTATGGTACTAGATCTAGTGTATTTCTTGAGGATTGTAGTGTTCATAACTTGCAGAGAGAAGATAGCAGTTGCACTTGA 2460 0.4191 MTLYMPLFRSCSSLRPLTQLHAHLVVTGLHRDQLASTKLLESYAQMGCLQSSRLVFYAYPSPDSFMFGVLIKCYLWNHLFDQVLSLYHHQIHKGSQLIQNCSFLYPSVLRAASGAGDLVSGRKMHGRIVKSGFSTDHVIGTSLLGLYGEFCCLNDARKVFDEMCDRDLVSWSSIVSCYIENGQPREGLEMFRSMVSEGIKPDSVTLLSIAEACAKVSCLRLAKSVHGYVIRKEMVDDARLNNSLIVMYSQCGHVCRAKGLFEYLHDPSTACWTSMISSYNQNGCFEEAIDTFIQMQELEVEPNEVTMINVLHFCARLGRLKEGKSAHCFILRKAMDAADLDLGPALIDFYAACWKISSCEKLLHLMGNNNIVSWNTLISFYAREGLNQEAMTLFALMFAKGLMPDSFSLASSISATASAGSIQFGQQIHGNVMKRGFMDEFVQNSLMDMYSKCGFVDLAYSIFDKITQKSIVTWNCMICGFSQNGISVEALNLFDEMYFNSLEINEVTLLSAIQASTNLGYLEKGKWIHHKIIVSGVRKDLYIDTALVDMYAKCGDLQTAQRVFNSMSEKSVVSWSTMIAAYGIHGRINAAISLFTKMVESGIKPNEVTFMNILSACRHAGSVEEGKLYFNSMKDYGIVPNAEHFSSIVDLLSRAGDINGAYEITKSMFRPIDASIWGALLNGCKIHGRMDMIENIDKELREISTDDTGYYTLLSNIYAEGGNWYESRKVRSRMEGMGLKKVPGYSTIEIDRKIFRFGAGDTSELLMKEIYMFLEKFQSLAQEQGCDVECYSTVYGTRSSVFLEDCSVHNLQREDSSCT* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1208 819 Pfam E motif 698 749 IPR046848 -
Lja2g1208 819 Gene3D Tetratricopeptide repeat domain 545 751 IPR011990 GO:0005515
Lja2g1208 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Lja2g1208 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Lja2g1208 819 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 269 404 - -
Lja2g1208 819 TIGRFAM PPR: pentatricopeptide repeat domain 271 304 IPR002885 -
Lja2g1208 819 TIGRFAM PPR: pentatricopeptide repeat domain 573 607 IPR002885 -
Lja2g1208 819 TIGRFAM PPR: pentatricopeptide repeat domain 608 642 IPR002885 -
Lja2g1208 819 TIGRFAM PPR: pentatricopeptide repeat domain 472 505 IPR002885 -
Lja2g1208 819 TIGRFAM PPR: pentatricopeptide repeat domain 169 203 IPR002885 -
Lja2g1208 819 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Lja2g1208 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Lja2g1208 819 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 274 - -
Lja2g1208 819 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 400 775 - -
Lja2g1208 819 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 274 - -
Lja2g1208 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Lja2g1208 819 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 269 404 - -
Lja2g1208 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Lja2g1208 819 Pfam PPR repeat 169 199 IPR002885 -
Lja2g1208 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Lja2g1208 819 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 400 775 - -
Lja2g1208 819 Pfam PPR repeat family 267 314 IPR002885 -
Lja2g1208 819 Pfam PPR repeat family 370 409 IPR002885 -
Lja2g1208 819 Pfam PPR repeat family 469 509 IPR002885 -
Lja2g1208 819 Pfam PPR repeat family 570 617 IPR002885 -
Lja2g1208 819 Gene3D Tetratricopeptide repeat domain 433 526 IPR011990 GO:0005515
Lja2g1208 819 Gene3D Tetratricopeptide repeat domain 328 432 IPR011990 GO:0005515
Lja2g1208 819 Gene3D Tetratricopeptide repeat domain 95 220 IPR011990 GO:0005515
Lja2g1208 819 Gene3D Tetratricopeptide repeat domain 221 327 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1208 Lja-Chr2 11476232 11478691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1208 102 777 Glycoside Hydrolase AT3G49170 31.105 1.57e-110 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1208 - - aprc:113870383 1350.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1208 2 11476232 11478691 Lja2g1208 2 11476232 11478691 ECH