Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1197 ATGAACGGTGACCGACCGCCGTGGAAGGAGGAGGCGGCGTCTGGCGGTAGAGGACCTCCGCCACGGCCCACCATCACTCTGCCGCCACGTACGGATACCCTTTTCAGCGGTGGTTTCAGCCCTGGTCCCATGACTCTGCTCTCTAATCTCCTTGCCGATGGCGACGACTGCAAGTCATTCTCCCAGCTGCTCGCCGGCGCCATGGCGTCTCCGGCGGCGGCGGCACACGGTGGCTTCTCACCTGGTCTCTTTTCTCCTCAGGTGTCCTTTGAAATGTCACACCAGCAAGCTCTAGCACAGGTTTCAGCTCAGGGCAGCTCAAACATGCATCTCCAACCAGAAAATTCATTATCTAGATCAGCATTGCATACTTCCAATACTACACAACACCACCTTGTGCCACCCTCAGGGGAAGAATCTCATGCAGCAAAGACAGAACCCACTGATTATTCTCTCTCTGAACAAAGATTCCAGTCTTCTTCATTGAATGTTGACAAGCCTGCTGATGACGGCTACAACTGGAGAAAATATGGGCAGAAACATGTGAAGGGTAGTGAGTTTCCTCGAAGCTATTACAAGTGCACGCATCCTAATTGTCCTGTCAAGAAGAAGGTGGAGCGCTCGCTCGATGGCCATGTCACCGCGATCATTTATAAAGGGGAACACAATCATCAACGCCCTCATCCAAACAAGCGCGCTAAAGATGCCGTGATTTCAAATGACAATTCCAATATGCAAGGGAATGTTGATTTAACAACTTATCAAGGGATGAGTACAAATGCAATGTCTAAGATGGATCAGGAATCTAGTCAGGCAACTGCTGAACATGTATCAGGAACAAGTGACAGTGAGGAAGTAGGTGATCATGAAACTGAAGTGGATGAGAAAAATGTTGAGCCTGAACCCAAGAGGAGAAATACAGAAGTCATACCCTCAGAACCAGCTTCTTCACATAGGACAGTCACAGAGAACAGAATAATTGTGCAAACAACAAGTGAAGTTGACCTCTTAGATGACGGGTATAGATGGCGAAAATATGGGCAGAAAGTTGTCAAAGGAAATCCTTATCCTAGGAGCTATTACAAATGTACAACCCCGGGTTGCAATGTCCGGAAGCATGTGGAGAGAGCTTCAACAGATCCTAAAGCTGTGATAACGACATATGAAGGAAAGCATAATCATGATGTGCCTGCAGCTAAGACTAACAGTCACACCATCGCCAACAATAGTGCGTCACAGTTAAGATCACAAAACAATAATCATGGTTTTGGAAACAGTGGAATTGGGGGCAACGAGCAACAGCCTGTTGCGCGTCTGCGGTTGAAGGAAGAACAGATAACCTAG 1344 0.4784 MNGDRPPWKEEAASGGRGPPPRPTITLPPRTDTLFSGGFSPGPMTLLSNLLADGDDCKSFSQLLAGAMASPAAAAHGGFSPGLFSPQVSFEMSHQQALAQVSAQGSSNMHLQPENSLSRSALHTSNTTQHHLVPPSGEESHAAKTEPTDYSLSEQRFQSSSLNVDKPADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGHVTAIIYKGEHNHQRPHPNKRAKDAVISNDNSNMQGNVDLTTYQGMSTNAMSKMDQESSQATAEHVSGTSDSEEVGDHETEVDEKNVEPEPKRRNTEVIPSEPASSHRTVTENRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNSASQLRSQNNNHGFGNSGIGGNEQQPVARLRLKEEQIT* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1197 447 MobiDBLite consensus disorder prediction 99 134 - -
Lja2g1197 447 MobiDBLite consensus disorder prediction 414 447 - -
Lja2g1197 447 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 80 446 - -
Lja2g1197 447 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 17 76 - -
Lja2g1197 447 MobiDBLite consensus disorder prediction 146 166 - -
Lja2g1197 447 SMART WRKY_cls 337 396 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1197 447 SMART WRKY_cls 168 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1197 447 MobiDBLite consensus disorder prediction 1 38 - -
Lja2g1197 447 Pfam WRKY DNA -binding domain 169 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1197 447 Pfam WRKY DNA -binding domain 338 394 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1197 447 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 446 IPR044810 GO:0003700
Lja2g1197 447 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 76 IPR044810 GO:0003700
Lja2g1197 447 MobiDBLite consensus disorder prediction 281 308 - -
Lja2g1197 447 SUPERFAMILY WRKY DNA-binding domain 166 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1197 447 ProSiteProfiles WRKY domain profile. 332 397 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1197 447 MobiDBLite consensus disorder prediction 262 280 - -
Lja2g1197 447 MobiDBLite consensus disorder prediction 99 170 - -
Lja2g1197 447 Gene3D WRKY domain 153 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1197 447 Gene3D WRKY domain 322 398 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1197 447 SUPERFAMILY WRKY DNA-binding domain 329 397 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1197 447 MobiDBLite consensus disorder prediction 414 432 - -
Lja2g1197 447 MobiDBLite consensus disorder prediction 262 321 - -
Lja2g1197 447 ProSiteProfiles WRKY domain profile. 169 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1197 Lja-Chr2 11370937 11380834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1197 22 64 WRKY Transcription Factor Family AT2G03340 68.085 9.78e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja2g1197 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1197 - - gmx:100127369 667.151