Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1191 ATGGAAGAGACAGAGGATTCCACCAATGCTACCCAGAAACTCACCACAAAAACAAGAAGCTTCATCAATGGAGCCAACTCTCATGAGCATCACCACTATCATCAGCATCATCATCTGCTACAGTACTCAGCTCAGGTTGGCTTCTGCAACAACAACAACCAGAACAAGTATCAGAGGTACTACCCAGCACTTCTTCCTCTACCTTCTCTTATACCTCTTCAACAACTACCTCTGATTCCACCCTTCCCTCAAAACCAGAGCATCAATTCAAAAACCCATTTGCAGAAACCTCCATGCAAACTCAATTGTTCTCCTTCTTCGGATTACAAGCTCTCTGAACCAGCTCTTGCTCCTGATTCAGCCCCAAAGGAACTTCAGCGGCAAACTAAGGAATCCTTTAAAGGAGATGATGGGAGGAAACTCATTCCAACAAGGAAGCAACAGGACTTAATTGTTGCAAGGAGGCCAGACTCAGGTGGAAAAGAAGGTTCTGTGATCTCTCTCCTTGCCAACCACTTTTTGGTGCAGTTTGATCCATCCCAAAAAATTTATCATTACAATGTTGAAATTACTCCTCATCCCTCCAAGGATGTGGCAAGGGAAATCAAACAGAAATTGGTAAATAACAATTCTGCTATGCTCTCGGGTGCTCTGCCGGCATATGATGGGAGACAGAATCTTTACAGTTCAATTGAATTCCAAAACGATAAGCTTGAGTTCTACATTAGCCTCCTAATCCCAACAAGCAAACTGACTTCACCTTATGGAGAAATGTATGACTTGAAGGAGAAGAAAGAACAGCATAAACTGTTCCGGATAAATATCAAACTAGTCTCAAAGATTGATGGGAAGGAGTTAACTAACTACTTGAGCAAAGAGGGTGATGAATGGATTCCACTTCCACAGGATTATCTACATGCTTTGGATGTAGTTCTGAGGGAAAGCCCGACTGAGAAATGCATACCTGTAGGGAGATCATTCTACTCAAATTCAATGGGAAGAAGCAAAGACATTGGGGGAGGAGCTGTGGGATTGAGGGGATTCTTTCAGAGTCTTCGACCGACCCAACAAGGACTTGCTCTCAATCTCGATTTCTCAGTAACTGCATTCCATGAGAGTATAGGAGTGATTTCATACTTGCAGAAACGCCTCGAGTTTCTTCGAGACCTTTCTCAAAGGAAGACAACTCAATTAACTTGTGAAGAAAGGAAGGAAGTGGAGAAGGCACTGAAGAACATCAGGGTCTTTGTTTGCCACAGAGAAACAGTTCAGAGATACCGTGTCTACGGCTTAACTGAGGAGGCTACTGAAAATCTTTGGTTTGCTGACAGGGATGGACAGAATCTGAGGCTTGTGAATTACTTCAAAGATCACTATAACTACGACATACAATTCCGAAAATTGCCATGCTTGCAGATTAGTAGGAGTAAACCTTGTTATCTTCCTATGGAGCTTTGTGTGATCTGCGAAGGCCAGAAATTCCTCGGGAAACTGTCGGATGATCAGACAGCAAGAATACTCAAGATGGGCTGCCAAAGACCAGGAGAACGAAAAACCATCATCGAAGGAGTCATGAGAGGAAATGTTGGGTCTACCAGTGGTGAGCAGGAAAGAGAATTCAAACTCCAAGTCTCAAGAGAAATGACAAAGTTGACTGGGAGAATTCTTCACCCTCCCAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAACCTTACTCCTTCACGCCATGACCGTCAGTGGAACCTTCTAGATGGCAATGTCTTTGAAGGAACTACAATTGAAAGGTGGGCACTTGTAAGCTTTGGGGGCACCCCTGAGCAGAAGTCTAATATCCCTAGATTCATAAACCAATTATGTCAAAGGTGTGAACAACTGGGCATTTTTCTTAATAAGAACACAGTTATGAGTCCCCAGTTTGAATCAAGCCAGGTTCTTAACAATGTCACACTTTTGGAATCTAAGCTCAAGAGAATCCAGAGGACTGCCTCAAACAATCTCCAGCTTCTTATTTGTGTAATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAACGGATTGCTGAGACAAGTATCGGTCTCATAAGCCAATGCTGCCTGTACCCAAATCTGTGCAAGTTAAGTTCACAGTTCTTGGCAAATTTGGCCCTCAAAATCAATGCCAAAGTTGGTGGATGCACAGTTGCCCTCTACAACTCACTGCCTTCTCAATTACCACGCCTCTTTCACATCGATGAGCCCGTGATATTCATGGGAGCCGATGTGACTCATCCTCATCCTCTTGATGATTCCAGTCCATCTGTTGCTGCTGTTGTTGGTAGCATGAATTGGCCAACAGCAAACAAGTACATTTCAAGAATAAGGTCCCAAACACACAGACAAGAAATTATCCAGGATCTTGGTCCAATGGTGGGGGAATTGCTTGATGATTTTTATCAGGAGGTAGAGAAACTCCCCAACCGAATAGTTTTCTTTAGAGACGGAGTTAGCGAAACACAATTTCACAAAGTGATGCAAGAGGAACTGCAATCCATAAGACACGCATGTGAAAGGTTTCCTGATTATAAACCTCTCATTACCTTTGCAGTTGTGCAGAAGAGGCATCACACAAGGTTGTTTCCCTTTCCCGGTGAAACTGATCCGTCTTCCCCTCAGAATAACTTTTTATACGAAAACATTCCTCCCGGGACCGTGGTCGATTCAGTGATTACTCATCCGAAGGAATTTGATTTCTATCTCTGTAGTCATTGGGGTGTGAAAGGAACAAGCAGACCAACTCATTACCATGTCTTGTGGGATGAAAACCAGTTTACTTCTGATGAGCTTCAGAAGCTGGTTTACAATTTGTGCTACACTTTTGTTAGGTGTACAAAGCCAATTTCTTTGGTGCCTCCTGCATATTATGCACATTTAGCTGCATACAGAGGAAGACTTTACCTTGAGCGATCAGAGTCCTTAGGTTTGTTCAGAAACACATCTACATTATCAAGAGCTGCTCCTCCAAAGACAGCACCACTTCCTAAACTTAGTGAAAACATCAAGAAGCTCATGTTCTACTGCTAG 3063 0.4313 MEETEDSTNATQKLTTKTRSFINGANSHEHHHYHQHHHLLQYSAQVGFCNNNNQNKYQRYYPALLPLPSLIPLQQLPLIPPFPQNQSINSKTHLQKPPCKLNCSPSSDYKLSEPALAPDSAPKELQRQTKESFKGDDGRKLIPTRKQQDLIVARRPDSGGKEGSVISLLANHFLVQFDPSQKIYHYNVEITPHPSKDVAREIKQKLVNNNSAMLSGALPAYDGRQNLYSSIEFQNDKLEFYISLLIPTSKLTSPYGEMYDLKEKKEQHKLFRINIKLVSKIDGKELTNYLSKEGDEWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSNSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNLDFSVTAFHESIGVISYLQKRLEFLRDLSQRKTTQLTCEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEEATENLWFADRDGQNLRLVNYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPGERKTIIEGVMRGNVGSTSGEQEREFKLQVSREMTKLTGRILHPPKLKLGDGGHVRNLTPSRHDRQWNLLDGNVFEGTTIERWALVSFGGTPEQKSNIPRFINQLCQRCEQLGIFLNKNTVMSPQFESSQVLNNVTLLESKLKRIQRTASNNLQLLICVMERKHKGYADLKRIAETSIGLISQCCLYPNLCKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFHIDEPVIFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGPMVGELLDDFYQEVEKLPNRIVFFRDGVSETQFHKVMQEELQSIRHACERFPDYKPLITFAVVQKRHHTRLFPFPGETDPSSPQNNFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRNTSTLSRAAPPKTAPLPKLSENIKKLMFYC* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1191 1020 MobiDBLite consensus disorder prediction 124 140 - -
Lja2g1191 1020 Pfam N-terminal domain of argonaute 166 312 IPR032474 -
Lja2g1191 1020 MobiDBLite consensus disorder prediction 110 140 - -
Lja2g1191 1020 SUPERFAMILY Ribonuclease H-like 654 981 IPR012337 -
Lja2g1191 1020 SMART PAZ_2_a_3 381 512 IPR003100 GO:0005515
Lja2g1191 1020 Gene3D - 741 1020 IPR036397 GO:0003676
Lja2g1191 1020 PANTHER PROTEIN ARGONAUTE 7 121 1019 - -
Lja2g1191 1020 CDD PAZ_argonaute_like 384 489 - -
Lja2g1191 1020 Pfam PAZ domain 384 506 IPR003100 GO:0005515
Lja2g1191 1020 Pfam Argonaute linker 1 domain 322 371 IPR014811 -
Lja2g1191 1020 Gene3D - 555 731 - -
Lja2g1191 1020 Gene3D paz domain 367 494 - -
Lja2g1191 1020 Pfam Piwi domain 670 978 IPR003165 GO:0003676
Lja2g1191 1020 SUPERFAMILY PAZ domain 368 526 IPR036085 GO:0005515
Lja2g1191 1020 ProSiteProfiles Piwi domain profile. 669 981 IPR003165 GO:0003676
Lja2g1191 1020 SMART Piwi_a_2 669 981 IPR003165 GO:0003676
Lja2g1191 1020 CDD Piwi_ago-like 538 980 IPR045246 -
Lja2g1191 1020 SMART DUF1785_2 321 373 IPR014811 -
Lja2g1191 1020 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 121 1019 - -
Lja2g1191 1020 ProSiteProfiles PAZ domain profile. 381 490 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1191 Lja-Chr2 11288810 11293366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1191 160 1020 Eukaryotic Initiation Factors Gene Family AT1G48410 41.425 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1191 K11593 - gmx:100797755 1827.37