Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1179 ATGGAGGGAAGCTCAAGCTCTGAACTCCCACCTGGCTTCAGGTTTCATCCTACAGATGAGGAACTAATTGTGCACTACCTTTGTAATCAAGTCTCATCACATCCATGCCCTGCACCTATCATCCCTGAAGTGGATATCTATAAATTTGATCCATGGGAATTGCCTGATAAAACAGCTTTTGGAGAAAAGGAATGGTATTTCTTTAGTCCAAGAGAGAGGAAATATCCAAATGGGGCGAGGCCTAATAGGGCAGCTGTGTCTGGGTATTGGAAGGCTACTGGCACAGACAAATCAATCTTTAGTGGGTCTCAGCATGTTGGGGTGAAGAAAGCTTTGGTCTTTTACAAGGGTAAGCCACCAAAGGGTGTCAAGACAGATTGGATCATGCATGAGTATAGACTAATTGGAACAACAACACAACCCCCTAGGCAAATTGGGTCCATGAGACTTGATGACTGGGTCCTGTGTAGGATCTATAAGAAGAAGGCCACAGCAAATTCACTAGAGGTAAAAGAGGAAGAATACCCAACAACTCCAATTGATCTGAAAAGAGCAAATGAAGAGTGTGAACAGAAAATTGATCTGAAATTTCCAAGGACTAATTCCCTTGCTAATCTTTTGGATGTGGATTACTTGGGTTCAATTTCACATATTTTATCTGATGGATCATATAACTCAACATTTGACTTTCAACTTAACTCTGCACATGGTGGAACAGACCCATTACAGCTGATGGAAATGCCTACTAACTCTAGTTATGCAGCAGATTCAGGGAAGCTACAAGTGAAACGAAACAACACCATCAACCCAACGATATTTGTGAAACAAGATTATGACCATAGAGGACAATAG 852 0.4155 MEGSSSSELPPGFRFHPTDEELIVHYLCNQVSSHPCPAPIIPEVDIYKFDPWELPDKTAFGEKEWYFFSPRERKYPNGARPNRAAVSGYWKATGTDKSIFSGSQHVGVKKALVFYKGKPPKGVKTDWIMHEYRLIGTTTQPPRQIGSMRLDDWVLCRIYKKKATANSLEVKEEEYPTTPIDLKRANEECEQKIDLKFPRTNSLANLLDVDYLGSISHILSDGSYNSTFDFQLNSAHGGTDPLQLMEMPTNSSYAADSGKLQVKRNNTINPTIFVKQDYDHRGQ* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1179 283 SUPERFAMILY NAC domain 6 161 IPR036093 GO:0003677|GO:0006355
Lja2g1179 283 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Lja2g1179 283 PANTHER BNAC06G30680D PROTEIN 5 230 - -
Lja2g1179 283 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Lja2g1179 283 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Lja2g1179 283 PANTHER NAC TRANSCRIPTION FACTOR 56 5 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1179 Lja-Chr2 11193076 11194661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1179 1 218 NAC Transcription Factor Family AT1G69490 65.351 1.52e-106 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g1179 NAM 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1179 - - gmx:732552 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1179 2 11193076 11194661 Lja2g1179 2 11193076 11194661 ECH