Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1171 ATGGCTCTCATTGGCTTTCTCCTGCTCACAATGTTCACCTCTGCTTATGCCTATGGTGGAGGTTGGACTGATGCACATGCTACTTTCTATGGTGGGGGTGATGCCTCAGGAACAATGGGTGGGGCTTGTGGATATGGGAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTCTGAGCACTGCTATGTTCAACAATGGTTTGAGCTGTGGCTCTTGCTATGAAGTTAGGTGTGTGAATGACCACAGGTGGTGCCTTCCTGGCTCCATTGTGGTCACTGCCACCAACTTCTGTCCACCAAACAATGCTCTGCCCAACAATGCAGGAGGGTGGTGCAACCCTCCCCTCCACCACTTTGACCTTGCTCAGCCTGTTTTCCTCCGCATTGCCCAATACAAAGCTGGAATTGTGCCTGTGTCATACAGAAGGGTTGCCTGCAGGAGAAGGGGTGGGATCAGGTTCACAATCAATGGTCATTCCTACTTCAACCTGGTTCTGATTACTAATGTGGGTGGTGCTGGGGATGTTCATAGTGCGGCTATCAAAGGGTCAAGAACTGGGTGGAGTCCAATGTCAAGGAACTGGGGGCAGAACTGGCAGAGCAACAGCTATCTGAATGGACAGAGCTTGTCTTTCAAGGTCACCACTAGTAGTGGACAGACTGTGGTGTCCTACAATGTTGCTCCAGCTGGGTGGTCCTTTGGCCAAACCTACACTGGTGCTCAATTCCGCTAG 738 0.5122 MALIGFLLLTMFTSAYAYGGGWTDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTAMFNNGLSCGSCYEVRCVNDHRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVSYRRVACRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTGWSPMSRNWGQNWQSNSYLNGQSLSFKVTTSSGQTVVSYNVAPAGWSFGQTYTGAQFR* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1171 245 Pfam Lytic transglycolase 57 142 IPR009009 -
Lja2g1171 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Lja2g1171 245 PANTHER EXPANSIN-A10 8 245 - -
Lja2g1171 245 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Lja2g1171 245 SMART dpbb_1 57 142 IPR007112 -
Lja2g1171 245 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576
Lja2g1171 245 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Lja2g1171 245 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Lja2g1171 245 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Lja2g1171 245 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Lja2g1171 245 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Lja2g1171 245 Gene3D - 152 244 IPR036749 -
Lja2g1171 245 Gene3D - 9 148 IPR036908 -
Lja2g1171 245 PANTHER EXPANSIN-A15 8 245 IPR002963 GO:0009664
Lja2g1171 245 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Lja2g1171 245 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Lja2g1171 245 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Lja2g1171 245 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Lja2g1171 245 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Lja2g1171 245 PRINTS Expansin signature 79 90 IPR002963 GO:0009664
Lja2g1171 245 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Lja2g1171 245 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Lja2g1171 245 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Lja2g1171 245 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Lja2g1171 245 SUPERFAMILY Barwin-like endoglucanases 8 170 IPR036908 -
Lja2g1171 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1171 Lja-Chr2 11133267 11134966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1171 1 245 Expansin Gene Family AT2G03090 79.032 2.58e-148 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1171 - - gmx:100527059 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1171 2 11133267 11134966 Lja2g1171 2 11133267 11134966 ECH
Lja2g1171 2 11133267 11134966 Lja1g5534 1 95611196 95613735 ECH
Lja2g1171 2 11133267 11134966 Lja4g2138 4 22951568 22953976 ECH
Lja2g1171 2 11133267 11134966 Lja1g2842 1 34215522 34217940 ECH
Lja2g1171 2 11133267 11134966 Lja2g1605 2 15786217 15789106 ECH