Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1170 ATGGCCAGCAAGTGCTATACAATCTCTTCACAAGAAAATCAAAATGGTTACCCTTTTTCCTCTTCCTGTTCTACTTCTTCCTTCCCATCCCCTTCAATGGGAATGGTGTATGCAGACATGGTATCACTCTCTCTTAACTCCAACTTTTCAAATGTTTCTTCATCTCAAGAGAGTAACCATGCCTGCAAGGGCTCTGGATTGGAAACTGGGAGTACAAACTGGACTTTTCCATTCATGAGAGAGTGCCTTCCCAGAAGCTTTGAAGAAGAAAACCCCAACATGGATGATGTGGAGGCAAAAAGTTCTGATTGCAGTGATGAGGCTGGGGAAACAAACCACAATGCTGACTTCAATGAAGAGAACCCTAATGAAAACCCTTCCATTTGCAAAGAAGGAGATAGTGGACAATCCAAACTGTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAACTTGTTGCTCTTTATGGTCCCCAAAATTGGAACTTGATAGCTGAAAAGTTGGAAGGAAGATCAGGGAAGAGTTGTAGGCTGAGATGGTTCAACCAGCTTGATCCAAGGATTAACAGGAGGGCTTTCAGTGAAGAAGAGGAAGAAAGGCTAATGCAGGCACATAGAATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTTCCTGGAAGAACAGATAATGCTGTGAAGAATCACTGGCATGTTATCATGGCTAGGAAATATAGGGAACAATCCAATGCTTACAGGAGGAGAAGGCTCAACAACCAATCGGTTCACAAAAGAACAACTGATCATCAGCAAAATCAAACCCTTGCTTGCAGATCAGATTCCACAACAGAGTTAACAGAACATCATGCATCATCACACTACCTTCTCAATGGATCAGTCCTCAACAATAACAACATGGCTGTTGAATTAACAACCCACATGAGTGGTTCTGGAAGCAGAAACCAAGCCCCCCCACATGTTGGCTTCTATGCTCAACAGTCACCATTTGATTTCTTCTCTGGTGATAGAAGCAATATTGACATGGTGGGAAAGTCTATCAGTCATATCAGAAGCTGGGACAGTACTGGTGATGAATTTCATAATCATCATCACCATCAACAACATTATCAACATCATCAACAACATCATCAAGTGTCTGGTTTCTACCCACATTATCCCCAACAATATCTGATGGGGACACAACAGCCAAACAATCACAAATTTTACTGTCTGTCATCAAGTTCCTCATCAGCATCAACAACAACAAGAACAACATTACCCCATGTTTCCTTTGCAGAAAAAACAGGTAAAGTTCTGATGACTGACCCCTCAGATGCTGTTCCACCTCCTCCATTTTTCGACTTCCTTGGAGTAGGAGCCACATGA 1380 0.4268 MASKCYTISSQENQNGYPFSSSCSTSSFPSPSMGMVYADMVSLSLNSNFSNVSSSQESNHACKGSGLETGSTNWTFPFMRECLPRSFEEENPNMDDVEAKSSDCSDEAGETNHNADFNEENPNENPSICKEGDSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSNAYRRRRLNNQSVHKRTTDHQQNQTLACRSDSTTELTEHHASSHYLLNGSVLNNNNMAVELTTHMSGSGSRNQAPPHVGFYAQQSPFDFFSGDRSNIDMVGKSISHIRSWDSTGDEFHNHHHHQQHYQHHQQHHQVSGFYPHYPQQYLMGTQQPNNHKFYCLSSSSSSASTTTRTTLPHVSFAEKTGKVLMTDPSDAVPPPPFFDFLGVGAT* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1170 459 Gene3D - 142 193 - -
Lja2g1170 459 ProSiteProfiles Myb-like domain profile. 142 188 IPR001005 -
Lja2g1170 459 Gene3D - 195 273 - -
Lja2g1170 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 243 IPR017930 -
Lja2g1170 459 PANTHER MYB PROTEIN-RELATED 303 459 - -
Lja2g1170 459 PANTHER MYB PROTEIN-RELATED 33 308 - -
Lja2g1170 459 SUPERFAMILY Homeodomain-like 142 235 IPR009057 -
Lja2g1170 459 MobiDBLite consensus disorder prediction 89 114 - -
Lja2g1170 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 188 IPR017930 -
Lja2g1170 459 MobiDBLite consensus disorder prediction 258 281 - -
Lja2g1170 459 PANTHER MYB TRANSCRIPTION FACTOR 303 459 - -
Lja2g1170 459 PANTHER MYB TRANSCRIPTION FACTOR 33 308 - -
Lja2g1170 459 SMART sant 141 190 IPR001005 -
Lja2g1170 459 SMART sant 193 241 IPR001005 -
Lja2g1170 459 MobiDBLite consensus disorder prediction 89 132 - -
Lja2g1170 459 ProSiteProfiles Myb-like domain profile. 189 239 IPR001005 -
Lja2g1170 459 CDD SANT 145 186 IPR001005 -
Lja2g1170 459 MobiDBLite consensus disorder prediction 115 132 - -
Lja2g1170 459 CDD SANT 196 236 IPR001005 -
Lja2g1170 459 Pfam Myb-like DNA-binding domain 194 237 IPR001005 -
Lja2g1170 459 Pfam Myb-like DNA-binding domain 142 188 IPR001005 -
Lja2g1170 459 MobiDBLite consensus disorder prediction 262 279 - -
Lja2g1170 459 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1170 Lja-Chr2 11112048 11114096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1170 121 254 MYB Transcription Factor Family AT1G69560 76.923 3.71e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g1170 Myb_DNA-binding 2.1e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1170 2 11112048 11114096 Lja2g1170 2 11112048 11114096 ECH