Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1168 ATGGGTCTGCAAAATCAAAGTGTGCATTTTGTTCTGTCCACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAGCTTCACCAACGATTCATCGAGGCGACTAATCAGCTCGGAGGTGCAGAAAAGGCAACTCCAAAGAATCTTATGAGGGTGATGGGGATTCCAGGACTTACTTTGTACCACCTCAAGAGCCATTTACAGAAGTATAGGCTAGGGAAAAGCCAAGTACTAGAAACCTGCTCTGACAGCAAACAAGAAGATGATTATGACACAGAAACCAAGAGCAGTGATGATCATTGCAGCAGGGAAATCAGTTTTGGGGCCCAGAATCAAAATACTGAGAACTTGCAGATAGCTGAGGCTCTCCAAATGCAAATGGAAGTACAGAGAAAGCTTTATGAACAAATTGAGGTACAGAAACATTTGCAGCTTCGAATCGAAGCTCAAGGGAAATATTTACAATCAGTGCTAAAGAAGGCACAGGAAGCACTTTCAGGCTACAACAATACTTCCCCAGTTGGTATAGAACTCACAAAATCTGAACTTTCTCAACTAGTTACCATGATCAACCATGCTTGCCCAAATTCTCCCACCTCAGAACTCACAGAAACAAGAGGGTTGAGCTTAAACTGTGGGCAGAGGAAAAGAGACAGAGGAACCATGTGTTCATTGGAAAGTTCTTTGACATCTTCTGAAAGCTCTGGAAGGAGAGAAGAGAAACAACCAATGGAAGAAGAAATAGGGGACTTCAAAAATTCCAATACTATTCCACTTGAATTGACACTATTAACCGTTCACCATGAAGATAAAGCATCCAATGGAGATTCAAGTAGTGAAGCTAATGGGAGAAAAAGAAGTGCAGCTACTAAATTTGATGGTAGCAGTGCTGAGCAACCACCTGGGAAAAGATGTAGCAGGAAACCCAAGTTGTCAGAAATGCTTGACTTGAACAGCCAATGTGAGAGTGACATGGACTCAACAAGTTCAAAAACAGCATTAGACTTAAATTGCAGCCCAAACTTTTCGGAACCATGA 1035 0.4213 MGLQNQSVHFVLSTDAKPRLKWTPELHQRFIEATNQLGGAEKATPKNLMRVMGIPGLTLYHLKSHLQKYRLGKSQVLETCSDSKQEDDYDTETKSSDDHCSREISFGAQNQNTENLQIAEALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALSGYNNTSPVGIELTKSELSQLVTMINHACPNSPTSELTETRGLSLNCGQRKRDRGTMCSLESSLTSSESSGRREEKQPMEEEIGDFKNSNTIPLELTLLTVHHEDKASNGDSSSEANGRKRSAATKFDGSSAEQPPGKRCSRKPKLSEMLDLNSQCESDMDSTSSKTALDLNCSPNFSEP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1168 344 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 341 - -
Lja2g1168 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 341 IPR044848 GO:0003700
Lja2g1168 344 Pfam Myb-like DNA-binding domain 19 70 IPR001005 -
Lja2g1168 344 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
Lja2g1168 344 MobiDBLite consensus disorder prediction 269 344 - -
Lja2g1168 344 MobiDBLite consensus disorder prediction 212 253 - -
Lja2g1168 344 Gene3D - 16 74 - -
Lja2g1168 344 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Lja2g1168 344 MobiDBLite consensus disorder prediction 232 247 - -
Lja2g1168 344 Pfam MYB-CC type transfactor, LHEQLE motif 116 162 IPR025756 -
Lja2g1168 344 Coils Coil 119 139 - -
Lja2g1168 344 MobiDBLite consensus disorder prediction 315 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1168 Lja-Chr2 11072727 11074895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1168 10 204 G2-like Transcription Factor Family AT1G69580 59.113 2.48e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja2g1168 Myb_DNA-binding 3.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1168 - - gmx:100787178 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1168 2 11072727 11074895 Lja2g1168 2 11072727 11074895 ECH