Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1166 ATGCATTACATTTACAACAACAATGTTCCTTCCAGATTCTTCCACAACGTTCCATCATCATCACTTTCAGTGGGCGCACACCTTCTCTCTTCTCTCTCATATATTCACTCCGATTCCACCTTCATCTTCCATTCCTCTGCAACAAAACCACCACCACTTTCCTCTCTTTCAATGGCTTCTTCTGACTCCGACGCAGCTGAGATTTCCTCTCTCTTCGAACGCCTTTTCAGAACCAGAGACGTCTCCATGTTCTTGCCCTTCCTCTTCGGCTTATCAGAATCAAGAAACAGCGACGACCCAGATCAGGAAACTGAGAGTGAAGAAGGTTTCCAGCGTCAAAGAATCATCTTGGTGAACCCCTTTACACAGGGCATGGTGATGATTGACGGTGCTTCGAGTTTGGAAGCTCTGTTTCGTGAGCTTGGGAGTGCTGCTAACAAGGGTGGTAGGCCACCGGCTTCCAAGGAATCTATAGATGCTATGCCGAGTGTTGAGGTTGGAGAAGGAGATGATGATGATGGGGAGTGTGTGGTTTGTTTGGAGGGGTTTGAGGTTGGTAAGGTGGTGAAAGAGATGCCTTGTAAGCATAGGTTTCATCCTGATTGTATTGAGAAGTGGTTGGGGATTCATGGGTCTTGCCCTGTTTGTAGGTATGAGATGCCTGTTGAGGAGAAAGATGTGGGCAAGAAGGGAGATGAAGAGGGAGAAGAAGGGGGAGAAGAGAGGAGGAGGGTTGGTGGTGAAGTTTGGGTTAGCTTTTCTTTCAATGGAAGTAGCAGAAACCAGGAACCAAATCAAGCTCCTTCTCATGATGATTCAAGTGATTCTTCATCTAGTCCTAGAGGTGATACTGAGGTAGAAGAGAGTTGA 870 0.4678 MHYIYNNNVPSRFFHNVPSSSLSVGAHLLSSLSYIHSDSTFIFHSSATKPPPLSSLSMASSDSDAAEISSLFERLFRTRDVSMFLPFLFGLSESRNSDDPDQETESEEGFQRQRIILVNPFTQGMVMIDGASSLEALFRELGSAANKGGRPPASKESIDAMPSVEVGEGDDDDGECVVCLEGFEVGKVVKEMPCKHRFHPDCIEKWLGIHGSCPVCRYEMPVEEKDVGKKGDEEGEEGGEERRRVGGEVWVSFSFNGSSRNQEPNQAPSHDDSSDSSSSPRGDTEVEES* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1166 289 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Lja2g1166 289 MobiDBLite consensus disorder prediction 224 247 - -
Lja2g1166 289 PANTHER - 66 231 - -
Lja2g1166 289 SMART ring_2 176 216 IPR001841 -
Lja2g1166 289 MobiDBLite consensus disorder prediction 252 275 - -
Lja2g1166 289 Pfam Ring finger domain 175 217 IPR001841 -
Lja2g1166 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 223 IPR013083 -
Lja2g1166 289 SUPERFAMILY RING/U-box 168 222 - -
Lja2g1166 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 231 - -
Lja2g1166 289 MobiDBLite consensus disorder prediction 224 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1166 Lja-Chr2 11066990 11067859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1166 65 260 C3H Transcription Factor Family AT1G26800 52.041 5.17e-64 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1166 - - lang:109356689 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1166 2 11066990 11067859 Lja2g1166 2 11066990 11067859 ECH