Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1157 ATGTTGAATGTAGAGGTAATTGGCAACAAGAAAAGGAAGAGATGTGGGAGAATTTTCAGGTTCAAGAACTTTGGTGAGCCAGGGTACCCTGTTATGTTTACAGGGCCATCATTTCGTGAGAATGTGAGTGCATTACTTGAATTTGCGAATTTGGAGAGTAGTTTAAGCATGGGAGTGTCCATATGGTCATTTCAACTTGAAGTTCATCACCACCCACCTTTGCATATCTTCTTGTTTGTGATTGAAGAGCCAATTGAAGCAGCTCTGAATCGTCACTGCAAGCATTGTCAATACGTTGGCTGGGGTAACCATTTCATATGCAATAAGAAGTATCATTTCTTGTTACCCTCAAAGGAGGCACTGGCTACCTGCAAAAGCTGTGAAGGGTGTTGTGATGCTGCAATTGCTACATTAATGAATAATGGTAAGTCCCAATTAATAGAATTACAGGGCCATATGATGCATGGTGTTTTTCACTCTAACGGATTCGGGCATTTGGTATGTGTGAATGGATTGGAAACGGGTTCAAATTTGGCTGGAAATCAGATCATGGAGTTTTGGAATCGCTTGTGCAACGGATTACAAGCAAGGAAAGTGAGTTTGAATGACACTTCACAGAAAAGAGGCATGGAACTAAGACTTGTCAATGGAGTAGCTCATAGCGCGCCATGGTTCGGTCGTTGGGGCTATAAATTCGGTCGAGGAAGCTTCGGTGTAACTCAATCCATGTACCACAAAGCCATAGAAGCAATCAGAAGCTTGCCACTATACTTACTCACACACCACATTGGCAATTCCAACCATGAAATCCCAATCATCTTCTCAAGGTATCAAACACTTTCAGACCAGTCTCTAGTGACCCTCGGTGACCTATTTTATTACATGTTAGAGCTCAAGTCACGCCTTCCCCGCGAAACCAGCATCGGTGCGTCCTCTAACGCCATGGCTGAGACCAATTGTCGCTGGTCCCCTAAAAGGATTGAGATGGCAACAAGGGTCATTGTTGAGGCCTTGAAAAGGACAGAATTCAGGTGGATCTCAAGGCAGCAAGTTAGAGACGCTGCTCGCGCCTACATCGGTGACACCGGTTTGTTGGATTTCGTTTTGAAGTCACTAGGGAACCATGTCGTTGGAAACTACCTCGTTCGCCGAAGCTTGAATCCCGTGACCAAGGTCTTGGAATATTGCTTAGAAGACATCTCCAATGTGTACCCTTGTAAGAAAGTGAAGGAAAACAAGTACAAGATCACAAGGGCTCAACTTATCAAAGACATTCATTATTTGTACAAGTACATTCTCATAGACCCAAAACCAGTGATAGGGTCAGAGTTTCTCTCAGGTATAACATTGGCTTCTAGGATAATCCTTGACACCAAGTATTTCATCAGAGATTACTCTGGAGAGGTTCCTTTGGAGGTTCAATTAGGCTCAGAAGGGAAACTTAGCCTTAATTGCACAATTTTGTTGAGGAACAATGCAGGTCCTGATGAGTATTTTAACAAGGCTAGAATCACTTATGTGAATGCAGTTGCGTTAAATGCAGGTCCCGATGAGTACTTGCCGCCTTATGAGTGTATCCAATTGAAAAGCAGTGCTACAGTGAATGACTTGAAGGTGGAAGTTGAAAGGAATTTCAGGGAAATCTATTGGGGGTTAAGGAGTTTTGTGGTTGAATCAAGTGGGAATTTGAATGCTAATGGGACAGAAATGGTTTTTGGGCTAATTGAAGTGGGTGGGAAAGTTGTGCTTGAAGGTTGGTGTGGTGACATGATGGGAATGAACATGATTGAGCAAATGTGTGAAAATGATCCAAACATTGGCATTGTGGATTGCAGTTGTGGAACTAAAGAGGATGATGGTGAGAGAATGGTGTCTTGTGATATCTGTGAAATTAGGCAGCATACTAGGTGTGTTGGCATTCCGAATGATGAACAAGTTCCTCACATTTTTCTCTGCAAGAGGTGCGAGCAAGAAATTGTTCTGTTCCCTTCATTGCCATAG 2001 0.4298 MLNVEVIGNKKRKRCGRIFRFKNFGEPGYPVMFTGPSFRENVSALLEFANLESSLSMGVSIWSFQLEVHHHPPLHIFLFVIEEPIEAALNRHCKHCQYVGWGNHFICNKKYHFLLPSKEALATCKSCEGCCDAAIATLMNNGKSQLIELQGHMMHGVFHSNGFGHLVCVNGLETGSNLAGNQIMEFWNRLCNGLQARKVSLNDTSQKRGMELRLVNGVAHSAPWFGRWGYKFGRGSFGVTQSMYHKAIEAIRSLPLYLLTHHIGNSNHEIPIIFSRYQTLSDQSLVTLGDLFYYMLELKSRLPRETSIGASSNAMAETNCRWSPKRIEMATRVIVEALKRTEFRWISRQQVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNVYPCKKVKENKYKITRAQLIKDIHYLYKYILIDPKPVIGSEFLSGITLASRIILDTKYFIRDYSGEVPLEVQLGSEGKLSLNCTILLRNNAGPDEYFNKARITYVNAVALNAGPDEYLPPYECIQLKSSATVNDLKVEVERNFREIYWGLRSFVVESSGNLNANGTEMVFGLIEVGGKVVLEGWCGDMMGMNMIEQMCENDPNIGIVDCSCGTKEDDGERMVSCDICEIRQHTRCVGIPNDEQVPHIFLCKRCEQEIVLFPSLP* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1157 666 ProSitePatterns Zinc finger PHD-type signature. 611 655 IPR019786 -
Lja2g1157 666 CDD PHD_MMD1_like 610 655 - -
Lja2g1157 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 659 IPR013083 -
Lja2g1157 666 SUPERFAMILY FYVE/PHD zinc finger 598 658 IPR011011 -
Lja2g1157 666 Pfam PHD-finger 611 657 IPR019787 -
Lja2g1157 666 SMART PHD_3 610 656 IPR001965 -
Lja2g1157 666 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 666 - -
Lja2g1157 666 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1157 Lja-Chr2 11019631 11022102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1157 10 666 PHD Transcription Factor Family AT5G22260 50.946 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja2g1157 PHD 8.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1157 - - gmx:100780210 1095.88