Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1155 ATGAGCGATCACCTGGTGCTATTCGTTGACCAACTCGTGCGCCCTGTCCCTGTTGACCCCGTCGCGCAGCCCGCCCAGCTCCCTTCTGAGCCCTCGCCGTCTCTCGATGCTGCCGCCGCGGCCGCGGGTCCTTCCGGGACCGCACCGCCGGCGGATCAAGATGTTGAGGATGCTGACGAGGATGAGCCGCTGATCCAGATGGCGGAATGCCGCATCTGCCAGGAGGAGGATCAGGTTTCCAACCTGGAGACGCCTTGCGCCTGCAGCGGCAGCCTTAAGTATGCTCACAGAAAATGTGTTCAGCATTGGTGCAATGAGAAAGGAGACATCACTTGTGAGATATGTCATCAGCCCTATCAACCTGGGTATACCGCCCCGCCACCTCGCCCTAATCCTGATGAAACTACCATTGATATAGGAGGAGGGTGGACAATATCTGGCACGCCTTTGGACTTGCGTGATCCTAGACTTCTGGCAATTGCAGAGGCAGAACGCCAATTCTTGGATGCTGAATATGATGAGTATGCTGCTTCAAATGCCAGCGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTGCTCTTGCGGCATGCATTGTCTGTCACAGATGGTGATGCTTCTGATGATGATCCTTCTAACTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATCCTGCAACGTCGACGACAAAGACAGGAAGCTGCAGCTTTAGCAGCCACCCAAGTTGCTTTTGTTCTACAATCTGGGCAGCGTAGAGGTCTACAATTTGCCATAGCGCCAGGACCACCCCCCACTGTACACCAGGAGCAAGTGTAG 870 0.5356 MSDHLVLFVDQLVRPVPVDPVAQPAQLPSEPSPSLDAAAAAAGPSGTAPPADQDVEDADEDEPLIQMAECRICQEEDQVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPDETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPPTVHQEQV* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1155 289 CDD RING_CH-C4HC3_MARCH 70 116 - -
Lja2g1155 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 278 - -
Lja2g1155 289 Coils Coil 158 178 - -
Lja2g1155 289 MobiDBLite consensus disorder prediction 20 58 - -
Lja2g1155 289 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Lja2g1155 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 278 IPR033275 -
Lja2g1155 289 SUPERFAMILY RING/U-box 68 120 - -
Lja2g1155 289 SMART ringv_2 69 116 IPR011016 GO:0008270
Lja2g1155 289 Pfam Protein of unknown function (DUF3675) 121 240 IPR022143 -
Lja2g1155 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 125 IPR013083 -
Lja2g1155 289 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1155 Lja-Chr2 11007422 11010987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1155 69 145 C3H Transcription Factor Family AT2G37950 34.831 3.48e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1155 - - gmx:100779674 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1155 2 11007422 11010987 Lja2g1155 2 11007422 11010987 ECH