Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1153 ATGGACTTGAAAACAGAAACTCCACCACCACCGACTCAACACCGCCACCTCATAACCGCCACCCCATCACCACCGTCCACGGTGGCGGTTTCCTACAAAGAGTGCCTCAGGAACCACGCAGCCAGCTTAGGCGCCCACGCACTCGACGGCTGCGGCGAGTTCATGCCCTCCGCCGAGCCCCGCTCCCAGCTAACATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGTGACACAAAACAGCAATATTCCAACCCCACCTTCATCAGCTTCTACCCCAGCATCAGCACAAGCCCGAGTTCAAGTCCAAGCCGCTCTCCACCGCCGCTCTCTCATCATTTCCCACCCTCCCACCACCACCTTCACAGCCAGATATCAAAGTCGGCGCCGCCGCACGTGCAGTTAGCTCTTGGAACAGAGAACCCGAGCAAGAAGAAGAGGTGCAGGACCAAGTTTAGTGAAGAGCAGAAGGGGAAGATGCTGGAATTCTCAGAGAAATTGGGTTGGAGAATGCAGAGAGAGGAGGAAGGTTCGATCCAGAAGTTTTGTGATGGCATTGGCGTGTCCAGAGAGGTGTTCAAGGTTTGGATGCACAACAACAAGAGTAGATCTTCCTCTGAGATTGGGAATGAGAAGAAGATCAATGGTGGTGGATATGGCTTTCAACTTCTTAGTGATATTAACAATCCTCACAGCAGAAATAGCAGCACCGATTAA 720 0.5403 MDLKTETPPPPTQHRHLITATPSPPSTVAVSYKECLRNHAASLGAHALDGCGEFMPSAEPRSQLTCAACGCHRNFHRRDTKQQYSNPTFISFYPSISTSPSSSPSRSPPPLSHHFPPSHHHLHSQISKSAPPHVQLALGTENPSKKKRCRTKFSEEQKGKMLEFSEKLGWRMQREEEGSIQKFCDGIGVSREVFKVWMHNNKSRSSSEIGNEKKINGGGYGFQLLSDINNPHSRNSSTD* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1153 239 MobiDBLite consensus disorder prediction 95 130 - -
Lja2g1153 239 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 32 79 IPR006456 -
Lja2g1153 239 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 16 206 - -
Lja2g1153 239 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 146 202 IPR006455 -
Lja2g1153 239 MobiDBLite consensus disorder prediction 1 25 - -
Lja2g1153 239 SUPERFAMILY Homeodomain-like 140 204 IPR009057 -
Lja2g1153 239 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 206 - -
Lja2g1153 239 Pfam ZF-HD protein dimerisation region 30 80 IPR006456 -
Lja2g1153 239 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 32 79 IPR006456 -
Lja2g1153 239 Gene3D - 137 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1153 Lja-Chr2 10991683 10992659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1153 28 202 ZF-HD Transcription Factor Family AT1G69600 47.895 1.09e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja2g1153 ZF-HD_dimer 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1153 - - lja:Lj5g3v0526310.1 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1153 2 10991683 10992659 Lja2g1153 2 10991683 10992659 ECH